Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DQL62_RS07785 Genome accession   NZ_LS483300
Coordinates   1536911..1537408 (-) Length   165 a.a.
NCBI ID   WP_052658450.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7485     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1531911..1542408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL62_RS07760 (NCTC7485_01465) gcvPB 1532073..1533545 (-) 1473 WP_000202182.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  DQL62_RS07765 (NCTC7485_01466) gcvPA 1533538..1534884 (-) 1347 WP_000019695.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL62_RS07770 (NCTC7485_01467) gcvT 1534904..1535995 (-) 1092 WP_000093341.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL62_RS07775 - 1536154..1536678 (-) 525 WP_001015120.1 shikimate kinase -
  DQL62_RS07780 - 1536668..1536814 (-) 147 WP_078062659.1 hypothetical protein -
  DQL62_RS07785 (NCTC7485_01469) comGF 1536911..1537408 (-) 498 WP_052658450.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL62_RS07790 (NCTC7485_01470) comGE 1537326..1537625 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL62_RS07795 (NCTC7485_01471) comGD 1537612..1538058 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL62_RS07800 (NCTC7485_01472) comGC 1538036..1538347 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL62_RS14010 comGB 1538361..1539432 (-) 1072 Protein_1472 competence type IV pilus assembly protein ComGB -
  DQL62_RS07815 (NCTC7485_01475) comGA 1539404..1540378 (-) 975 WP_000697229.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL62_RS07820 (NCTC7485_01476) - 1540430..1541053 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DQL62_RS07825 (NCTC7485_01477) - 1541050..1541379 (-) 330 WP_001018873.1 MTH1187 family thiamine-binding protein -
  DQL62_RS07830 (NCTC7485_01478) - 1541379..1542365 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19135.84 Da        Isoelectric Point: 10.3157

>NTDB_id=1135515 DQL62_RS07785 WP_052658450.1 1536911..1537408(-) (comGF) [Staphylococcus aureus strain NCTC7485]
MILSKVTNRFVLSQKIPLLIKRHVFSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMLNNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1135515 DQL62_RS07785 WP_052658450.1 1536911..1537408(-) (comGF) [Staphylococcus aureus strain NCTC7485]
ATGATATTAAGCAAAGTGACCAACAGATTTGTGCTATCTCAAAAAATACCACTTCTTATCAAAAGACATGTATTCAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGCTTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

95.758

100

0.958
  comGF Staphylococcus aureus MW2

95.758

100

0.958

Multiple sequence alignment