Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DQL62_RS02770 Genome accession   NZ_LS483300
Coordinates   546741..547310 (+) Length   189 a.a.
NCBI ID   WP_000872871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7485     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 541741..552310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL62_RS02745 (NCTC7485_00513) cysE 542954..543601 (+) 648 WP_011382202.1 serine O-acetyltransferase -
  DQL62_RS02750 (NCTC7485_00514) cysS 543585..544985 (+) 1401 WP_000631985.1 cysteine--tRNA ligase -
  DQL62_RS02755 (NCTC7485_00515) - 544978..545382 (+) 405 WP_000370187.1 Mini-ribonuclease 3 -
  DQL62_RS02760 (NCTC7485_00516) rlmB 545390..546136 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DQL62_RS02765 (NCTC7485_00517) - 546136..546660 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DQL62_RS02770 (NCTC7485_00518) sigH 546741..547310 (+) 570 WP_000872871.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL62_RS02775 rpmG 547425..547568 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DQL62_RS02780 (NCTC7485_00519) secE 547624..547806 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DQL62_RS02785 (NCTC7485_00520) nusG 547819..548367 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DQL62_RS02790 (NCTC7485_00521) rplK 548548..548970 (+) 423 WP_001085789.1 50S ribosomal protein L11 -
  DQL62_RS02795 (NCTC7485_00522) rplA 549178..549870 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DQL62_RS02805 (NCTC7485_00524) rplJ 550142..550642 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DQL62_RS02810 (NCTC7485_00525) rplL 550685..551053 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DQL62_RS02815 (NCTC7485_00526) - 551228..551836 (+) 609 WP_000020294.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23048.88 Da        Isoelectric Point: 9.6253

>NTDB_id=1135502 DQL62_RS02770 WP_000872871.1 546741..547310(+) (sigH) [Staphylococcus aureus strain NCTC7485]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKNLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1135502 DQL62_RS02770 WP_000872871.1 546741..547310(+) (sigH) [Staphylococcus aureus strain NCTC7485]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTGGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCAGTAAAGTATGATTATTTGAGAAAAAATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment