Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   N837_RS02960 Genome accession   NZ_CP006689
Coordinates   551874..552524 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 546874..557524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N837_RS02925 (N920_02945) - 547252..548256 (+) 1005 WP_002852264.1 membrane protein -
  N837_RS02930 (N920_02950) tlyA 548253..549014 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  N837_RS02935 (N920_02955) ribF 548980..549834 (+) 855 WP_002852206.1 bifunctional riboflavin kinase/FAD synthetase -
  N837_RS02940 (N920_02960) cmoA 549821..550531 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  N837_RS02945 (N920_02965) - 550521..550742 (-) 222 WP_002859102.1 EexN family lipoprotein -
  N837_RS02950 (N920_02970) - 550739..551173 (-) 435 WP_002855128.1 EexN family lipoprotein -
  N837_RS02955 (N920_02975) - 551231..551863 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  N837_RS02960 (N920_02980) CJE0566 551874..552524 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  N837_RS02965 (N920_02985) nth 552521..553147 (-) 627 WP_002852225.1 endonuclease III -
  N837_RS02970 (N920_02990) peb4 553228..554049 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  N837_RS02975 (N920_02995) fbaA 554049..555113 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  N837_RS02980 (N920_03000) - 555208..556650 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=113523 N837_RS02960 WP_002852117.1 551874..552524(-) (CJE0566) [Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=113523 N837_RS02960 WP_002852117.1 551874..552524(-) (CJE0566) [Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment