Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N918_RS03145 Genome accession   NZ_CP006688
Coordinates   596641..597414 (+) Length   257 a.a.
NCBI ID   WP_002874287.1    Uniprot ID   Q0PAN4
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168-mfK12E5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 591641..602414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N918_RS03130 (N918_03145) - 592490..594424 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  N918_RS03135 (N918_03150) ilvC 594543..595565 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  N918_RS03140 (N918_03155) - 595569..596651 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  N918_RS03145 (N918_03160) dprA 596641..597414 (+) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  N918_RS03150 (N918_03165) ruvX 597411..597794 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  N918_RS03155 (N918_03170) - 597823..598662 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N918_RS03160 (N918_03175) msrA 598838..599335 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N918_RS03165 (N918_03180) ppa 599376..599894 (-) 519 WP_002858521.1 inorganic diphosphatase -
  N918_RS03170 (N918_03185) adk 599904..600482 (-) 579 WP_002858481.1 adenylate kinase -
  N918_RS03175 (N918_03190) aspS 600479..602230 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.64 Da        Isoelectric Point: 7.6510

>NTDB_id=113497 N918_RS03145 WP_002874287.1 596641..597414(+) (dprA) [Campylobacter jejuni subsp. jejuni NCTC 11168-mfK12E5]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=113497 N918_RS03145 WP_002874287.1 596641..597414(+) (dprA) [Campylobacter jejuni subsp. jejuni NCTC 11168-mfK12E5]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment