Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   NI25_RS18555 Genome accession   NZ_CP009754
Coordinates   4221170..4221847 (-) Length   225 a.a.
NCBI ID   WP_061443510.1    Uniprot ID   -
Organism   Streptomyces sp. CCM_MD2014     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4216170..4226847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI25_RS18545 (NI25_18450) - 4217668..4220199 (-) 2532 WP_061443508.1 ABC transporter permease -
  NI25_RS18550 (NI25_18455) - 4220196..4221044 (-) 849 WP_061443509.1 ABC transporter ATP-binding protein -
  NI25_RS18555 (NI25_18460) vraR 4221170..4221847 (-) 678 WP_061443510.1 response regulator Regulator
  NI25_RS18560 (NI25_18465) - 4221844..4223097 (-) 1254 WP_199560963.1 sensor histidine kinase -
  NI25_RS18565 (NI25_18470) - 4223270..4223785 (-) 516 WP_061443511.1 hypothetical protein -
  NI25_RS18570 (NI25_18475) - 4223882..4224907 (-) 1026 WP_061443512.1 hemolysin family protein -
  NI25_RS18575 (NI25_18480) - 4224904..4226310 (-) 1407 WP_061443513.1 hemolysin family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24193.94 Da        Isoelectric Point: 6.7393

>NTDB_id=113398 NI25_RS18555 WP_061443510.1 4221170..4221847(-) (vraR) [Streptomyces sp. CCM_MD2014]
MTTRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLAPPPGVTHR
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAKQRPAARGKPALRLKGL
TERETEVLTLVARGQSNSEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGEQ

Nucleotide


Download         Length: 678 bp        

>NTDB_id=113398 NI25_RS18555 WP_061443510.1 4221170..4221847(-) (vraR) [Streptomyces sp. CCM_MD2014]
GTGACGACGCGCGTCATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGCTTCGCCGCGCTGCTGGCCGCCCAGAGCGA
CATCGACGTGGTGGGCGAGGCCCCCGACGGTGCGCAGGGCGTCGAGCTGAGCCGGCGTACGCATCCGGACGTCGTGCTGA
TGGACGTGCGGATGCCCGAGATGGACGGCCTGGAGGCCGCGCGCAGGCTGCTCGCGCCGCCGCCGGGCGTGACCCACCGG
CCGCGGGTGCTCATGCTCACCACGTTCGACGTCGACGACTACGTCTACGAGGCGCTGCGGGCGGGCGCGAGCGGCTTCCT
GCTGAAGGACGCGCCGCCCGCCGACCTCATCGCCGCCGTACGGGTCGTGGCCGCGGGCGACGCGCTGCTCGCCCCCTCCG
TGACGCGCCGCCTCATCGCGGACTTCGCCAAGCAGCGCCCCGCGGCCCGGGGCAAGCCGGCCCTGCGGCTCAAGGGCCTG
ACGGAACGCGAGACCGAGGTCCTCACCCTCGTGGCCCGCGGGCAGTCCAACTCGGAGATCGCGCGGACGCTGGTGCTGGC
CGAGCAGACGGTGAAGACCCACGTCAGCCGCGTCCTGACCAAGCTCGACCTGCGCGACCGCGCCCAGGCGGTCGTCTTCG
CGTACGAGTCGGGCCTGGTGGCCCCGGGAGAGCAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

97.778

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.387