Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   NI25_RS16995 Genome accession   NZ_CP009754
Coordinates   3882877..3884286 (+) Length   469 a.a.
NCBI ID   WP_061443262.1    Uniprot ID   -
Organism   Streptomyces sp. CCM_MD2014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3877877..3889286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI25_RS16980 (NI25_16890) - 3878527..3879459 (-) 933 WP_061443259.1 Ppx/GppA phosphatase family protein -
  NI25_RS16985 (NI25_16895) - 3879531..3880343 (+) 813 WP_061443260.1 hypothetical protein -
  NI25_RS16990 (NI25_16900) - 3880492..3882276 (-) 1785 WP_061443261.1 BACON domain-containing protein -
  NI25_RS16995 (NI25_16905) radA/sms 3882877..3884286 (+) 1410 WP_061443262.1 DNA repair protein RadA Machinery gene
  NI25_RS17000 (NI25_16910) disA 3884368..3885492 (+) 1125 WP_030404779.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  NI25_RS39705 (NI25_16915) - 3885513..3886355 (-) 843 WP_078884643.1 hypothetical protein -
  NI25_RS17010 (NI25_16920) - 3886513..3887439 (+) 927 WP_061443263.1 A/G-specific adenine glycosylase -
  NI25_RS17015 (NI25_16925) - 3887717..3888250 (+) 534 WP_003975479.1 SigE family RNA polymerase sigma factor -
  NI25_RS17020 (NI25_16930) - 3888238..3888936 (+) 699 WP_199560937.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49734.81 Da        Isoelectric Point: 7.7528

>NTDB_id=113388 NI25_RS16995 WP_061443262.1 3882877..3884286(+) (radA/sms) [Streptomyces sp. CCM_MD2014]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGKVPDGMKVLEVADMGDALRVLPRSRRREAPREEGDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=113388 NI25_RS16995 WP_061443262.1 3882877..3884286(+) (radA/sms) [Streptomyces sp. CCM_MD2014]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACAGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGTGCGCCCGCCGTGCGTACGACCACGCCGGGGC
GCGTCACGACCTCCGCGGTGCCCATCGGCCAGGTGGACGGCCGGCAGGCGACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGGGCCGTGGTGCTCGTCGCGGGAGAGCCCGGCGTCGGCAAGTCCACGCT
GCTCCTCGACGTCGCGGCCAAGTCCGCGAGCGACGAGCACCGGACGCTGTACGTCACCGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGACCTCGCGGCCGTGCTC
GGGCATCTGGACGCCGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCCCTGATCCGGGCTTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGGGCCATCGCGGGGCCGCGGCTCCTTGAGCACCTCGTGGACGTCGTCCTGCATTTC
GAGGGTGACCGGCATGCGCGGCTGAGGCTGGTGCGAGGCGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGTTT
CGAGCTGCACGACGAAGGGATCACGGGGCTCGCCGATCCCAGCGGGCTGTTCCTCACGCGGCGGGCCGAGCCGGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAGGGCCGGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATT
CCCTCGCCCCGGCGCACCACCTCGGGGCTCGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGCG
CATCAGCGCCTTGGGCAAGAGGGACATCTACAGTGCGACCGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTCGCGCTGGCCAGCGCGGCCAGTGACACTCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAGGTCGGGCTC
GCCGGAGAGGTGAGACGGGTCACGGGGGTGCAGCGCAGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
GCCGGCCGATCCGGGGAAGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGCCGAGAGGCCCCACGGGAGGAGGGAGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403