Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MEPL_RS00040 Genome accession   NZ_CP006683
Coordinates   9984..10532 (+) Length   182 a.a.
NCBI ID   WP_013772946.1    Uniprot ID   F3Y7N0
Organism   Melissococcus plutonius S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4984..15532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEPL_RS00030 (MEPL_c000060) gyrA 6415..8862 (+) 2448 WP_013772944.1 DNA gyrase subunit A -
  MEPL_RS00035 (MEPL_c000070) rpsF 9636..9938 (+) 303 WP_014372804.1 30S ribosomal protein S6 -
  MEPL_RS00040 (MEPL_c000080) ssb 9984..10532 (+) 549 WP_013772946.1 single-stranded DNA-binding protein Machinery gene
  MEPL_RS00045 (MEPL_c000090) rpsR 10558..10797 (+) 240 WP_013772947.1 30S ribosomal protein S18 -
  MEPL_RS00050 (MEPL_c000100) - 11064..13033 (+) 1970 Protein_9 DHH family phosphoesterase -
  MEPL_RS00055 (MEPL_c000110) rplI 13052..13501 (+) 450 WP_013772949.1 50S ribosomal protein L9 -
  MEPL_RS00060 (MEPL_c000120) dnaB 14150..15517 (+) 1368 WP_013772950.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20132.76 Da        Isoelectric Point: 4.5566

>NTDB_id=113377 MEPL_RS00040 WP_013772946.1 9984..10532(+) (ssb) [Melissococcus plutonius S1]
MINNVVLVGRLTKDPDLRYTSNGSAVATFTLAINRNFTNQNGDREADFINCVIWRKPAETLANYARKGTLLGVVGRIQSR
SYENQQGQRVYVTEVICDNFQLLESRSVSEQRQQQDNNGFNNGNNQSSSNNGFGNNPGGYNSSFNPSSQSQNNSMPDFDN
KDTNPFGNAGSTIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=113377 MEPL_RS00040 WP_013772946.1 9984..10532(+) (ssb) [Melissococcus plutonius S1]
TTGATCAATAATGTTGTATTAGTCGGTAGGTTAACAAAAGATCCTGATTTACGATATACCTCTAATGGTTCAGCAGTAGC
CACATTTACTTTAGCAATCAATCGGAATTTTACAAATCAAAATGGCGATCGAGAAGCTGATTTTATTAATTGTGTTATTT
GGCGTAAGCCAGCTGAAACATTAGCTAATTATGCTCGTAAGGGAACTTTGTTGGGTGTTGTAGGCAGAATTCAATCACGT
TCATATGAAAATCAACAAGGACAACGTGTTTATGTAACTGAAGTTATTTGCGATAATTTTCAATTGTTAGAGTCACGTTC
TGTTTCAGAACAAAGGCAACAGCAAGATAACAATGGATTTAACAATGGCAATAATCAGTCTTCATCAAACAACGGTTTTG
GTAACAATCCCGGTGGTTACAATAGTAGTTTTAATCCATCTTCTCAGTCTCAAAATAACAGTATGCCTGATTTTGATAAT
AAAGATACCAATCCTTTTGGGAATGCTGGTTCTACTATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F3Y7N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.47

100

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.495

100

0.555

Multiple sequence alignment