Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   NI25_RS10930 Genome accession   NZ_CP009754
Coordinates   2555463..2556140 (-) Length   225 a.a.
NCBI ID   WP_061442282.1    Uniprot ID   -
Organism   Streptomyces sp. CCM_MD2014     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550463..2561140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI25_RS10920 (NI25_10850) - 2550541..2552226 (-) 1686 WP_061442280.1 extracellular solute-binding protein -
  NI25_RS10925 (NI25_10855) - 2552558..2555410 (+) 2853 WP_061442281.1 glycoside hydrolase family 3 C-terminal domain-containing protein -
  NI25_RS10930 (NI25_10860) vraR 2555463..2556140 (-) 678 WP_061442282.1 response regulator Regulator
  NI25_RS10935 (NI25_10865) - 2556137..2557387 (-) 1251 WP_061442283.1 sensor histidine kinase -
  NI25_RS10940 (NI25_10870) - 2557530..2558660 (+) 1131 WP_061442284.1 glycosyltransferase 87 family protein -
  NI25_RS10945 (NI25_10875) - 2558657..2559871 (+) 1215 WP_061442285.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24056.58 Da        Isoelectric Point: 6.1536

>NTDB_id=113373 NI25_RS10930 WP_061442282.1 2555463..2556140(-) (vraR) [Streptomyces sp. CCM_MD2014]
MIRALVADDQAVVRTGFVNLLATQEDIEVVAEAEDGAQAVRAARDTRPDLALLDIRMPHKNGIDAAREILADSGGATKVL
MLTTFGLDEYVYDALAAGAGGFLLKDATFPELLHAVRVVASGNALLSPEITKRLIAEFVHARGSRLPVPAAADLTARETE
VLTLIARGLSNAEIAAHLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLVRAGHESGARGR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=113373 NI25_RS10930 WP_061442282.1 2555463..2556140(-) (vraR) [Streptomyces sp. CCM_MD2014]
GTGATCAGGGCACTGGTCGCCGACGACCAGGCGGTCGTCCGCACCGGCTTCGTGAACCTCCTGGCCACCCAGGAGGACAT
CGAGGTCGTCGCCGAGGCGGAGGACGGGGCGCAGGCGGTGCGGGCGGCCCGCGACACCCGGCCCGACCTCGCGCTCCTGG
ACATCCGGATGCCGCACAAGAACGGCATCGACGCGGCCCGCGAGATCCTGGCCGACTCCGGCGGCGCGACGAAGGTGCTG
ATGCTGACCACCTTCGGCCTCGACGAGTACGTCTACGACGCGCTCGCGGCCGGGGCGGGCGGCTTCCTGCTCAAGGACGC
CACCTTTCCCGAACTGCTGCACGCGGTACGGGTGGTGGCGAGCGGCAACGCCCTTCTGTCGCCGGAGATCACCAAGCGGC
TGATCGCCGAGTTCGTGCACGCGCGCGGCTCGCGGCTGCCCGTCCCCGCGGCCGCCGACCTCACGGCCCGGGAGACGGAG
GTGCTGACCCTGATCGCGCGCGGCCTGTCCAACGCGGAGATCGCGGCACACCTCACCATCACCGACCACACCGTGAAGAC
CCACATCAACCGGCTCTTCGCCAAGCTGGAGCTGCGCGACCGCGCCCAGGCGGTGATCGTCGCCTACGAGCTGGGCCTGG
TCCGAGCGGGACACGAGTCGGGGGCCCGGGGCCGGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.741

96

0.391
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

99.556

0.36