Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CFBP2533_RS06105 Genome accession   NZ_LR828261
Coordinates   1464945..1466399 (-) Length   484 a.a.
NCBI ID   WP_180336569.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. pelargonii strain CFBP 2533 isolate Kemp 41     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459945..1471399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP2533_RS06080 (CFBP2533_12320) - 1460230..1460799 (+) 570 WP_233366553.1 hypothetical protein -
  CFBP2533_RS06085 (CFBP2533_12330) - 1460769..1462295 (+) 1527 WP_168958953.1 hypothetical protein -
  CFBP2533_RS06090 (CFBP2533_12340) pilB 1462330..1464066 (+) 1737 WP_168958954.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFBP2533_RS06095 (CFBP2533_12350) - 1464075..1464692 (-) 618 WP_168958955.1 Fic family protein -
  CFBP2533_RS06100 (CFBP2533_12360) - 1464689..1464871 (-) 183 WP_074066024.1 YhfG family protein -
  CFBP2533_RS06105 (CFBP2533_12370) pilR 1464945..1466399 (-) 1455 WP_180336569.1 sigma-54 dependent transcriptional regulator Regulator
  CFBP2533_RS06110 (CFBP2533_12380) - 1466485..1468098 (-) 1614 WP_168958956.1 HAMP domain-containing sensor histidine kinase -
  CFBP2533_RS06115 (CFBP2533_12390) sucC 1468331..1469500 (+) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  CFBP2533_RS06120 (CFBP2533_12400) sucD 1469525..1470400 (+) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52506.18 Da        Isoelectric Point: 6.5126

>NTDB_id=1132417 CFBP2533_RS06105 WP_180336569.1 1464945..1466399(-) (pilR) [Xanthomonas hortorum pv. pelargonii strain CFBP 2533 isolate Kemp 41]
MGPNPDDNCRLSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISAS
DLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1132417 CFBP2533_RS06105 WP_180336569.1 1464945..1466399(-) (pilR) [Xanthomonas hortorum pv. pelargonii strain CFBP 2533 isolate Kemp 41]
GTGGGCCCAAACCCCGACGACAATTGTCGTCTGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CTTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACCG
CGGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTCTGCCTGACCGACATGCGCCTGCCCGAT
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAGTATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGTTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCACCTCCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTGGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAAGTCGCGCGCAGCCAGGCGCCGGTTTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCATGAACAAGGCGCACGCGCAGCCGGCCCGTTCG
TGCCTGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCT
GCAGATGCAGGTCAAACTACTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCCTCTACCGAATCGCTGGTGG
ACGTGCGCATTCTCTCGGCCACCCACAAGGACCTCGGTGACCTGGTCTCCGACGGCCGTTTCCGCCACGACCTGTACTAT
CGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCGCTCGACGCGCTGGACACATACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGC
GATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGT
GGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGG
AGGAGAATCGTTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGTGCGCTGCGCTACAAGCTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment