Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHRYMOREF3P_RS10580 Genome accession   NZ_LR824569
Coordinates   2290011..2291360 (+) Length   449 a.a.
NCBI ID   WP_077418965.1    Uniprot ID   -
Organism   Chryseobacterium sp. JV274 strain F3_Prior isolate F3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2285011..2296360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHRYMOREF3P_RS10565 (CHRYMOREF3P_2199) yidC 2285404..2287203 (-) 1800 WP_077418967.1 membrane protein insertase YidC -
  CHRYMOREF3P_RS10570 (CHRYMOREF3P_2200) - 2287382..2288989 (-) 1608 WP_047386234.1 CTP synthase -
  CHRYMOREF3P_RS10575 (CHRYMOREF3P_2201) - 2289304..2289873 (-) 570 WP_077418966.1 YceI family protein -
  CHRYMOREF3P_RS10580 (CHRYMOREF3P_2202) radA 2290011..2291360 (+) 1350 WP_077418965.1 DNA repair protein RadA Machinery gene
  CHRYMOREF3P_RS10585 (CHRYMOREF3P_2203) - 2291476..2292069 (+) 594 WP_180564577.1 ACP phosphodiesterase -
  CHRYMOREF3P_RS10590 (CHRYMOREF3P_2204) - 2292066..2293028 (-) 963 WP_077418963.1 phosphatase PAP2 family protein -
  CHRYMOREF3P_RS10595 (CHRYMOREF3P_2205) - 2293155..2293670 (-) 516 WP_180564578.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49871.44 Da        Isoelectric Point: 6.6944

>NTDB_id=1132367 CHRYMOREF3P_RS10580 WP_077418965.1 2290011..2291360(+) (radA) [Chryseobacterium sp. JV274 strain F3_Prior isolate F3]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNSLVEEVVEKPSHKTPPFSKTKQHVINIVEVVTSEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1132367 CHRYMOREF3P_RS10580 WP_077418965.1 2290011..2291360(+) (radA) [Chryseobacterium sp. JV274 strain F3_Prior isolate F3]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACACAATATCCACAATGGCTCGGACAATGTAAAAACTG
TGGAGAATGGAACTCTCTGGTGGAAGAAGTGGTTGAAAAACCTTCTCATAAAACTCCCCCTTTCTCAAAAACCAAACAAC
ATGTAATCAATATTGTTGAAGTGGTAACGAGTGAAGAGCCGAGAATAAAAACTCCTTCAGATGAACTGAACCGCGTTTTA
GGAGGTGGAATTGTTTTAGGTTCCGTTACGTTGATTGGTGGTGAACCGGGAATTGGGAAGTCTACCCTTCTGCTTCAGCT
TGCTTTAAAAATGAAGAAAAAAATCTTCTATGTTTCGGGGGAGGAAAGTGCTTCTCAGATTAAAATGAGAGCAGACAGGC
TTACGGATATTCAAAATCCTAACTGCTTCCTTTTTACTGAGACATCATTGGAAAAAATTCTTCATGAGGCAAAAAAACTA
GAACCGGATTTTATGATTATTGACTCTATTCAGACTCTGCAGTCTCAACTGATAGAAAGTTCTCCGGGAACAGTTTCCCA
AATCCGGGAATGCTCCAATGAAATCATCAAATATGCCAAAGAAAATAATACGCCTGTTTTTCTTGTAGGACACATCACCA
AAGATGGTCAGATTGCCGGACCAAAAGTCCTGGAACATATGGTGGATGTGGTTTTGAACTTTGATGGGGACCGAAATCAC
CTTTTCAGATTGCTGAGAGCTAATAAAAACCGTTTTGGATCTACTTCTGAGATTGGTATCTATGAAATGGTTTCTCAGGG
ATTGAAAGAAATTAAAAATCCTTCTGAAATTCTGATCACCAAGAAATTTGAAGAACTTTCCGGGAACTCCGTTGCGGTAA
CTCTGGAGGGAAACCGGCCTATGCTTCTGGAGATTCAGGCATTGGTAAGTACTGCCGTTTATGGTACTCCTCAAAGAAGT
TCCACCGGGTTTGATTCCAAGAGGCTGAATATGCTTTTGGCTGTACTGGAAAAAAGAGCAGGTTTTCAATTGGGAGCTAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGACGATCCGGCACTGGATCTGGCAGTGGTAGCTTCTGTTCTTT
CATCCAATGAGGATATCGCCATCTCAGAACATTACTGCTTTGCCGGAGAAATCGGATTAAGTGGTGAAATACGTCCTGTA
GCACAGGTGGAACAAAGAATTACTGAGGCTGAAAAGCTTGGTTATGAAAAAATATTTGTGTCCAATCTTAATAAAATTCC
GAAAAGAAAATTTGGGATAAAGATCGAAGAAGTAAGTAAGATTGAGGATTTTCATGAGAGGCTTTTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.673

100

0.49
  radA Streptococcus pneumoniae Rx1

48.246

100

0.49
  radA Streptococcus pneumoniae D39

48.246

100

0.49
  radA Streptococcus pneumoniae R6

48.246

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.49
  radA Streptococcus mitis NCTC 12261

48.246

100

0.49
  radA Streptococcus mitis SK321

50.118

94.209

0.472

Multiple sequence alignment