Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BKMNNEJI_RS13900 | Genome accession | NZ_LR822061 |
| Coordinates | 2780315..2780758 (+) | Length | 147 a.a. |
| NCBI ID | WP_001099009.1 | Uniprot ID | A0A0C6EXF8 |
| Organism | Staphylococcus aureus isolate HU-14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2771295..2816241 | 2780315..2780758 | within | 0 |
Gene organization within MGE regions
Location: 2771295..2816241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKMNNEJI_RS13825 (LJDFIFNA_02645) | - | 2771295..2771960 (+) | 666 | WP_001024095.1 | SDR family oxidoreductase | - |
| BKMNNEJI_RS13830 (LJDFIFNA_02646) | - | 2772477..2773862 (-) | 1386 | WP_000861310.1 | recombinase family protein | - |
| BKMNNEJI_RS13835 (LJDFIFNA_02647) | - | 2774069..2774749 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| BKMNNEJI_RS13840 (LJDFIFNA_02648) | - | 2774781..2775506 (-) | 726 | WP_000661437.1 | PH domain-containing protein | - |
| BKMNNEJI_RS13845 (LJDFIFNA_02649) | - | 2775534..2776208 (-) | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| BKMNNEJI_RS13850 (LJDFIFNA_02650) | - | 2776225..2776557 (-) | 333 | WP_001055143.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS13855 (LJDFIFNA_02651) | - | 2776820..2777014 (+) | 195 | WP_000108122.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS13860 (LJDFIFNA_02652) | - | 2777014..2777778 (+) | 765 | WP_001002760.1 | phage antirepressor Ant | - |
| BKMNNEJI_RS13865 (LJDFIFNA_02653) | - | 2777795..2777989 (+) | 195 | WP_000390104.1 | hypothetical protein | - |
| BKMNNEJI_RS13870 (LJDFIFNA_02654) | - | 2778042..2778218 (+) | 177 | WP_001094935.1 | hypothetical protein | - |
| BKMNNEJI_RS13875 (LJDFIFNA_02655) | - | 2778193..2778423 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| BKMNNEJI_RS15270 (LJDFIFNA_02656) | - | 2778482..2778610 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| BKMNNEJI_RS13880 (LJDFIFNA_02657) | - | 2778603..2778764 (+) | 162 | WP_000066028.1 | DUF1270 family protein | - |
| BKMNNEJI_RS13885 (LJDFIFNA_02658) | - | 2778858..2779118 (+) | 261 | WP_000291084.1 | DUF1108 family protein | - |
| BKMNNEJI_RS13890 (LJDFIFNA_02659) | - | 2779131..2779667 (+) | 537 | WP_001004333.1 | host-nuclease inhibitor Gam family protein | - |
| BKMNNEJI_RS13895 (LJDFIFNA_02660) | - | 2779668..2780318 (+) | 651 | WP_000840496.1 | ERF family protein | - |
| BKMNNEJI_RS13900 (LJDFIFNA_02661) | ssbA | 2780315..2780758 (+) | 444 | WP_001099009.1 | single-stranded DNA-binding protein | Machinery gene |
| BKMNNEJI_RS13905 (LJDFIFNA_02662) | - | 2780770..2781444 (+) | 675 | WP_000057263.1 | putative HNHc nuclease | - |
| BKMNNEJI_RS13910 (LJDFIFNA_02663) | - | 2781441..2781590 (+) | 150 | WP_001081076.1 | hypothetical protein | - |
| BKMNNEJI_RS13915 (LJDFIFNA_02664) | - | 2781583..2781864 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| BKMNNEJI_RS13920 (LJDFIFNA_02665) | - | 2781930..2782700 (+) | 771 | WP_000190254.1 | conserved phage C-terminal domain-containing protein | - |
| BKMNNEJI_RS13925 (LJDFIFNA_02666) | - | 2782710..2783489 (+) | 780 | WP_000803062.1 | ATP-binding protein | - |
| BKMNNEJI_RS13930 (LJDFIFNA_02667) | - | 2783483..2783641 (+) | 159 | WP_000256589.1 | hypothetical protein | - |
| BKMNNEJI_RS13935 (LJDFIFNA_02668) | - | 2783654..2783875 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| BKMNNEJI_RS13940 (LJDFIFNA_02669) | - | 2783885..2784289 (+) | 405 | WP_000049793.1 | DUF1064 domain-containing protein | - |
| BKMNNEJI_RS13945 (LJDFIFNA_02670) | - | 2784294..2784479 (+) | 186 | WP_001187243.1 | DUF3113 family protein | - |
| BKMNNEJI_RS13950 (LJDFIFNA_02671) | - | 2784480..2784785 (+) | 306 | WP_000101252.1 | hypothetical protein | - |
| BKMNNEJI_RS13955 (LJDFIFNA_02672) | - | 2784913..2785269 (+) | 357 | WP_000029376.1 | SA1788 family PVL leukocidin-associated protein | - |
| BKMNNEJI_RS13960 (LJDFIFNA_02673) | - | 2785273..2785515 (+) | 243 | WP_000131389.1 | SAV1978 family virulence-associated passenger protein | - |
| BKMNNEJI_RS13965 (LJDFIFNA_02674) | - | 2785529..2785735 (+) | 207 | WP_000693987.1 | hypothetical protein | - |
| BKMNNEJI_RS13970 (LJDFIFNA_02675) | - | 2785738..2786139 (+) | 402 | WP_000695759.1 | hypothetical protein | - |
| BKMNNEJI_RS13975 (LJDFIFNA_02676) | - | 2786136..2786483 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| BKMNNEJI_RS13980 (LJDFIFNA_02677) | - | 2786480..2786788 (+) | 309 | WP_000144708.1 | hypothetical protein | - |
| BKMNNEJI_RS13985 (LJDFIFNA_02678) | - | 2786781..2787017 (+) | 237 | WP_001065079.1 | DUF1024 family protein | - |
| BKMNNEJI_RS13990 (LJDFIFNA_02679) | - | 2787022..2787204 (+) | 183 | WP_000028421.1 | hypothetical protein | - |
| BKMNNEJI_RS13995 (LJDFIFNA_02680) | - | 2787197..2787727 (+) | 531 | WP_000185651.1 | dUTP diphosphatase | - |
| BKMNNEJI_RS14000 (LJDFIFNA_02681) | - | 2787764..2787970 (+) | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| BKMNNEJI_RS14005 (LJDFIFNA_02682) | - | 2787967..2788161 (+) | 195 | WP_000132920.1 | hypothetical protein | - |
| BKMNNEJI_RS14010 (LJDFIFNA_02683) | - | 2788158..2788361 (+) | 204 | WP_001072797.1 | hypothetical protein | - |
| BKMNNEJI_RS14015 (LJDFIFNA_02684) | rinB | 2788354..2788527 (+) | 174 | WP_001657250.1 | transcriptional activator RinB | - |
| BKMNNEJI_RS14020 (LJDFIFNA_02685) | - | 2788528..2788674 (+) | 147 | WP_000990005.1 | hypothetical protein | - |
| BKMNNEJI_RS14025 (LJDFIFNA_02686) | - | 2788698..2789120 (+) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| BKMNNEJI_RS14030 (LJDFIFNA_02687) | - | 2789308..2789802 (+) | 495 | WP_001038244.1 | terminase small subunit | - |
| BKMNNEJI_RS14035 (LJDFIFNA_02688) | - | 2789805..2791100 (+) | 1296 | WP_000273011.1 | PBSX family phage terminase large subunit | - |
| BKMNNEJI_RS14040 (LJDFIFNA_02689) | - | 2791111..2792649 (+) | 1539 | WP_000909971.1 | phage portal protein | - |
| BKMNNEJI_RS14045 (LJDFIFNA_02690) | - | 2792656..2793651 (+) | 996 | WP_001668926.1 | minor capsid protein | - |
| BKMNNEJI_RS14050 (LJDFIFNA_02691) | - | 2793724..2793894 (+) | 171 | WP_000072202.1 | hypothetical protein | - |
| BKMNNEJI_RS15225 | - | 2793922..2794009 (+) | 88 | Protein_2746 | hypothetical protein | - |
| BKMNNEJI_RS14055 (LJDFIFNA_02692) | - | 2794003..2794623 (+) | 621 | WP_000392142.1 | DUF4355 domain-containing protein | - |
| BKMNNEJI_RS14060 (LJDFIFNA_02693) | - | 2794637..2795611 (+) | 975 | WP_000438500.1 | phage major capsid protein | - |
| BKMNNEJI_RS14065 (LJDFIFNA_02694) | - | 2795633..2795920 (+) | 288 | WP_001114089.1 | hypothetical protein | - |
| BKMNNEJI_RS14070 (LJDFIFNA_02695) | - | 2795929..2796261 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| BKMNNEJI_RS14075 (LJDFIFNA_02696) | - | 2796258..2796560 (+) | 303 | WP_001268309.1 | hypothetical protein | - |
| BKMNNEJI_RS14080 (LJDFIFNA_02697) | - | 2796560..2796907 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| BKMNNEJI_RS14085 (LJDFIFNA_02699) | - | 2796919..2797303 (+) | 385 | Protein_2753 | hypothetical protein | - |
| BKMNNEJI_RS14090 (LJDFIFNA_02700) | - | 2797322..2797903 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| BKMNNEJI_RS14095 (LJDFIFNA_02701) | - | 2797965..2798330 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| BKMNNEJI_RS14100 (LJDFIFNA_02702) | - | 2798360..2798704 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| BKMNNEJI_RS14105 (LJDFIFNA_02703) | - | 2798721..2802185 (+) | 3465 | WP_000141455.1 | hypothetical protein | - |
| BKMNNEJI_RS14110 (LJDFIFNA_02704) | - | 2802198..2803145 (+) | 948 | WP_000350670.1 | phage tail family protein | - |
| BKMNNEJI_RS14115 (LJDFIFNA_02705) | - | 2803154..2805055 (+) | 1902 | WP_031873673.1 | SGNH/GDSL hydrolase family protein | - |
| BKMNNEJI_RS14120 (LJDFIFNA_02706) | - | 2805070..2806980 (+) | 1911 | WP_000369016.1 | hypothetical protein | - |
| BKMNNEJI_RS14125 (LJDFIFNA_02707) | - | 2806980..2808803 (+) | 1824 | WP_000259632.1 | phage baseplate upper protein | - |
| BKMNNEJI_RS14130 (LJDFIFNA_02708) | - | 2808803..2809180 (+) | 378 | WP_000705894.1 | DUF2977 domain-containing protein | - |
| BKMNNEJI_RS14135 (LJDFIFNA_02709) | - | 2809190..2809363 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| BKMNNEJI_RS14140 (LJDFIFNA_02710) | - | 2809404..2809703 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| BKMNNEJI_RS14145 (LJDFIFNA_02711) | - | 2809840..2811738 (+) | 1899 | WP_000524023.1 | glucosaminidase domain-containing protein | - |
| BKMNNEJI_RS14150 (LJDFIFNA_02712) | - | 2811751..2812989 (+) | 1239 | WP_000276637.1 | BppU family phage baseplate upper protein | - |
| BKMNNEJI_RS14155 (LJDFIFNA_02713) | - | 2812994..2813389 (+) | 396 | WP_000387943.1 | hypothetical protein | - |
| BKMNNEJI_RS14160 (LJDFIFNA_02714) | - | 2813444..2813881 (+) | 438 | WP_000354128.1 | phage holin | - |
| BKMNNEJI_RS14165 (LJDFIFNA_02715) | - | 2813862..2814470 (+) | 609 | Protein_2769 | CHAP domain-containing protein | - |
| BKMNNEJI_RS14170 (LJDFIFNA_02716) | - | 2814533..2815078 (+) | 546 | WP_000136401.1 | NUMOD4 motif-containing HNH endonuclease | - |
| BKMNNEJI_RS14175 (LJDFIFNA_02717) | - | 2815390..2816241 (+) | 852 | Protein_2771 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16321.89 Da Isoelectric Point: 5.8347
>NTDB_id=1132296 BKMNNEJI_RS13900 WP_001099009.1 2780315..2780758(+) (ssbA) [Staphylococcus aureus isolate HU-14]
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=1132296 BKMNNEJI_RS13900 WP_001099009.1 2780315..2780758(+) (ssbA) [Staphylococcus aureus isolate HU-14]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
41.279 |
100 |
0.483 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
38.235 |
100 |
0.442 |