Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SA268_RS07530 Genome accession   NZ_CP006630
Coordinates   1553190..1553633 (-) Length   147 a.a.
NCBI ID   WP_001099007.1    Uniprot ID   A0AB73JFI4
Organism   Staphylococcus aureus subsp. aureus SA268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1548190..1558633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA268_RS07475 (SA268_1414) - 1548604..1548852 (-) 249 WP_001065068.1 DUF1024 family protein -
  SA268_RS07480 (SA268_1415) - 1548866..1549108 (-) 243 WP_038412528.1 SAV1978 family virulence-associated passenger protein -
  SA268_RS07485 (SA268_1416) - 1549112..1549468 (-) 357 WP_000029366.1 SA1788 family PVL leukocidin-associated protein -
  SA268_RS07490 (SA268_1417) - 1549469..1549654 (-) 186 WP_001187236.1 DUF3113 family protein -
  SA268_RS07495 (SA268_1418) - 1549659..1550063 (-) 405 WP_000049798.1 DUF1064 domain-containing protein -
  SA268_RS07500 (SA268_1419) - 1550073..1550294 (-) 222 WP_001123669.1 DUF3269 family protein -
  SA268_RS07505 (SA268_1420) - 1550307..1550465 (-) 159 WP_000256594.1 hypothetical protein -
  SA268_RS07510 (SA268_1421) - 1550459..1551238 (-) 780 WP_000803062.1 ATP-binding protein -
  SA268_RS07515 (SA268_1422) - 1551248..1552018 (-) 771 WP_000190254.1 conserved phage C-terminal domain-containing protein -
  SA268_RS07520 (SA268_1423) - 1552084..1552365 (+) 282 WP_000414755.1 hypothetical protein -
  SA268_RS15390 - 1552358..1552507 (-) 150 WP_001081076.1 hypothetical protein -
  SA268_RS07525 (SA268_1424) - 1552504..1553178 (-) 675 WP_000057262.1 putative HNHc nuclease -
  SA268_RS07530 (SA268_1425) ssbA 1553190..1553633 (-) 444 WP_001099007.1 single-stranded DNA-binding protein Machinery gene
  SA268_RS07535 (SA268_1426) - 1553630..1554280 (-) 651 WP_000840496.1 ERF family protein -
  SA268_RS07540 (SA268_1427) - 1554281..1554817 (-) 537 WP_001004336.1 host-nuclease inhibitor Gam family protein -
  SA268_RS07545 (SA268_1428) - 1554830..1555090 (-) 261 WP_001556704.1 DUF1108 family protein -
  SA268_RS07550 (SA268_1429) - 1555152..1555409 (-) 258 WP_051900989.1 hypothetical protein -
  SA268_RS07555 (SA268_1430) - 1555498..1555659 (-) 162 WP_001285954.1 DUF1270 domain-containing protein -
  SA268_RS07560 (SA268_1431) - 1555671..1555934 (-) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  SA268_RS15500 - 1556083..1556182 (-) 100 Protein_1467 hypothetical protein -
  SA268_RS07570 (SA268_1432) - 1556179..1556505 (-) 327 WP_001025595.1 hypothetical protein -
  SA268_RS15505 - 1556560..1556715 (+) 156 Protein_1469 hypothetical protein -
  SA268_RS07575 (SA268_1433) - 1556739..1556999 (-) 261 WP_000435343.1 hypothetical protein -
  SA268_RS07580 (SA268_1434) - 1557012..1557764 (-) 753 WP_001148617.1 phage antirepressor KilAC domain-containing protein -
  SA268_RS07585 (SA268_1435) - 1557825..1558052 (+) 228 WP_000801108.1 hypothetical protein -
  SA268_RS07590 - 1558054..1558245 (-) 192 WP_000502678.1 hypothetical protein -
  SA268_RS07595 (SA268_1436) - 1558302..1558511 (+) 210 WP_000772137.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16293.83 Da        Isoelectric Point: 5.8347

>NTDB_id=113226 SA268_RS07530 WP_001099007.1 1553190..1553633(-) (ssbA) [Staphylococcus aureus subsp. aureus SA268]
MNTVNLIGNLVADPELKGQNNNVVNFAIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=113226 SA268_RS07530 WP_001099007.1 1553190..1553633(-) (ssbA) [Staphylococcus aureus subsp. aureus SA268]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAATTAAAAGGTCAAAACAACAACGTAGTTAACTTTGC
AATTGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.279

100

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

38.235

100

0.442

Multiple sequence alignment