Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LJDFIFNA_RS13920 | Genome accession | NZ_LR822060 |
| Coordinates | 2778980..2779423 (+) | Length | 147 a.a. |
| NCBI ID | WP_001099009.1 | Uniprot ID | A0A0C6EXF8 |
| Organism | Staphylococcus aureus isolate P3.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2773980..2784423
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJDFIFNA_RS13860 (BKMNNEJI_02648) | - | 2774199..2774873 (-) | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LJDFIFNA_RS13865 (BKMNNEJI_02649) | - | 2774890..2775222 (-) | 333 | WP_001055143.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS13870 (BKMNNEJI_02650) | - | 2775485..2775679 (+) | 195 | WP_000108122.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS13875 (BKMNNEJI_02651) | - | 2775679..2776443 (+) | 765 | WP_001002760.1 | phage antirepressor Ant | - |
| LJDFIFNA_RS13880 (BKMNNEJI_02652) | - | 2776460..2776654 (+) | 195 | WP_000390104.1 | hypothetical protein | - |
| LJDFIFNA_RS13885 (BKMNNEJI_02653) | - | 2776707..2776883 (+) | 177 | WP_001094935.1 | hypothetical protein | - |
| LJDFIFNA_RS13890 (BKMNNEJI_02654) | - | 2776858..2777088 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| LJDFIFNA_RS15290 (BKMNNEJI_02655) | - | 2777147..2777275 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| LJDFIFNA_RS13900 (BKMNNEJI_02656) | - | 2777268..2777429 (+) | 162 | WP_031879466.1 | DUF1270 family protein | - |
| LJDFIFNA_RS13905 (BKMNNEJI_02657) | - | 2777523..2777783 (+) | 261 | WP_000291084.1 | DUF1108 family protein | - |
| LJDFIFNA_RS13910 (BKMNNEJI_02658) | - | 2777796..2778332 (+) | 537 | WP_001004333.1 | host-nuclease inhibitor Gam family protein | - |
| LJDFIFNA_RS13915 (BKMNNEJI_02659) | - | 2778333..2778983 (+) | 651 | WP_000840496.1 | ERF family protein | - |
| LJDFIFNA_RS13920 (BKMNNEJI_02660) | ssbA | 2778980..2779423 (+) | 444 | WP_001099009.1 | single-stranded DNA-binding protein | Machinery gene |
| LJDFIFNA_RS13925 (BKMNNEJI_02661) | - | 2779435..2780109 (+) | 675 | WP_000057263.1 | putative HNHc nuclease | - |
| LJDFIFNA_RS13930 (BKMNNEJI_02662) | - | 2780106..2780255 (+) | 150 | WP_001081076.1 | hypothetical protein | - |
| LJDFIFNA_RS13935 (BKMNNEJI_02663) | - | 2780248..2780529 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| LJDFIFNA_RS13940 (BKMNNEJI_02664) | - | 2780595..2781365 (+) | 771 | WP_000190254.1 | conserved phage C-terminal domain-containing protein | - |
| LJDFIFNA_RS13945 (BKMNNEJI_02665) | - | 2781375..2782154 (+) | 780 | WP_000803062.1 | ATP-binding protein | - |
| LJDFIFNA_RS13950 (BKMNNEJI_02666) | - | 2782148..2782306 (+) | 159 | WP_000256589.1 | hypothetical protein | - |
| LJDFIFNA_RS13955 (BKMNNEJI_02667) | - | 2782319..2782540 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| LJDFIFNA_RS13960 (BKMNNEJI_02668) | - | 2782550..2782954 (+) | 405 | WP_000049793.1 | DUF1064 domain-containing protein | - |
| LJDFIFNA_RS13965 (BKMNNEJI_02669) | - | 2782959..2783144 (+) | 186 | WP_001187243.1 | DUF3113 family protein | - |
| LJDFIFNA_RS13970 (BKMNNEJI_02670) | - | 2783145..2783450 (+) | 306 | WP_000101252.1 | hypothetical protein | - |
| LJDFIFNA_RS13975 (BKMNNEJI_02671) | - | 2783578..2783934 (+) | 357 | WP_000029376.1 | SA1788 family PVL leukocidin-associated protein | - |
| LJDFIFNA_RS13980 (BKMNNEJI_02672) | - | 2783938..2784180 (+) | 243 | WP_000131389.1 | SAV1978 family virulence-associated passenger protein | - |
| LJDFIFNA_RS13985 (BKMNNEJI_02673) | - | 2784194..2784400 (+) | 207 | WP_000693987.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16321.89 Da Isoelectric Point: 5.8347
>NTDB_id=1132251 LJDFIFNA_RS13920 WP_001099009.1 2778980..2779423(+) (ssbA) [Staphylococcus aureus isolate P3.1]
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=1132251 LJDFIFNA_RS13920 WP_001099009.1 2778980..2779423(+) (ssbA) [Staphylococcus aureus isolate P3.1]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
41.279 |
100 |
0.483 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
38.235 |
100 |
0.442 |