Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LJDFIFNA_RS05960 Genome accession   NZ_LR822060
Coordinates   1155651..1156637 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus isolate P3.1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1150651..1161637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJDFIFNA_RS05935 (BKMNNEJI_01133) - 1150911..1151258 (-) 348 WP_001242109.1 hypothetical protein -
  LJDFIFNA_RS05940 (BKMNNEJI_01134) - 1151444..1152037 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  LJDFIFNA_RS05945 (BKMNNEJI_01135) - 1152141..1152506 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LJDFIFNA_RS05950 (BKMNNEJI_01136) yjbH 1152529..1153335 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  LJDFIFNA_RS05955 (BKMNNEJI_01137) pepF 1153795..1155603 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  LJDFIFNA_RS05960 (BKMNNEJI_01138) coiA 1155651..1156637 (-) 987 WP_000959282.1 competence protein CoiA Machinery gene
  LJDFIFNA_RS05965 (BKMNNEJI_01139) mecA 1156758..1157477 (-) 720 WP_001217728.1 adaptor protein MecA -
  LJDFIFNA_RS05970 (BKMNNEJI_01140) spxA 1157848..1158243 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  LJDFIFNA_RS05975 (BKMNNEJI_01141) trpS 1158537..1159526 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  LJDFIFNA_RS05980 (BKMNNEJI_01142) - 1159636..1161240 (-) 1605 WP_000284571.1 IS1182-like element IS1182 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=1132237 LJDFIFNA_RS05960 WP_000959282.1 1155651..1156637(-) (coiA) [Staphylococcus aureus isolate P3.1]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1132237 LJDFIFNA_RS05960 WP_000959282.1 1155651..1156637(-) (coiA) [Staphylococcus aureus isolate P3.1]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976

Multiple sequence alignment