Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LJDFIFNA_RS05795 Genome accession   NZ_LR822060
Coordinates   1118998..1119567 (+) Length   189 a.a.
NCBI ID   WP_000287263.1    Uniprot ID   A0AAP6WTZ0
Organism   Staphylococcus aureus isolate P3.1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113998..1124567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJDFIFNA_RS05760 (H0509_RS05760) - 1115212..1115484 (-) 273 WP_001797239.1 lactococcin 972 family bacteriocin -
  LJDFIFNA_RS05765 (H0509_RS05765) - 1115494..1115595 (-) 102 WP_001792055.1 hypothetical protein -
  LJDFIFNA_RS15345 - 1116134..1116211 (-) 78 WP_099112139.1 putative holin-like toxin -
  LJDFIFNA_RS05775 (BKMNNEJI_01101) - 1116511..1117113 (-) 603 WP_001033865.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LJDFIFNA_RS05780 (BKMNNEJI_01102) - 1117128..1117304 (-) 177 WP_000214898.1 YkvS family protein -
  LJDFIFNA_RS05785 (BKMNNEJI_01103) - 1117503..1118489 (+) 987 WP_000668818.1 lipoate--protein ligase -
  LJDFIFNA_RS05790 (BKMNNEJI_01104) - 1118570..1118788 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  LJDFIFNA_RS05795 (BKMNNEJI_01105) comK/comK1 1118998..1119567 (+) 570 WP_000287263.1 competence protein ComK Regulator
  LJDFIFNA_RS05810 (BKMNNEJI_01108) - 1120054..1121565 (-) 1512 WP_000414165.1 bifunctional metallophosphatase/5'-nucleotidase -
  LJDFIFNA_RS05815 (BKMNNEJI_01109) - 1121704..1123062 (-) 1359 WP_000021865.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22615.90 Da        Isoelectric Point: 9.7172

>NTDB_id=1132236 LJDFIFNA_RS05795 WP_000287263.1 1118998..1119567(+) (comK/comK1) [Staphylococcus aureus isolate P3.1]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKKRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1132236 LJDFIFNA_RS05795 WP_000287263.1 1118998..1119567(+) (comK/comK1) [Staphylococcus aureus isolate P3.1]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAAACGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment