Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   H1W86_RS07370 Genome accession   NZ_LR822042
Coordinates   1427025..1428059 (-) Length   344 a.a.
NCBI ID   WP_372433575.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1358     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1422025..1433059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W86_RS07345 (STHERMO_1618) ilvD 1422277..1423995 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  H1W86_RS07350 (STHERMO_1619) - 1424108..1425289 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  H1W86_RS07360 (STHERMO_1620) trmB 1425525..1426166 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H1W86_RS07365 (STHERMO_1621) ccrZ 1426176..1426967 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H1W86_RS07370 (STHERMO_1622) pptB 1427025..1428059 (-) 1035 WP_372433575.1 ABC transporter permease Regulator
  H1W86_RS07375 (STHERMO_1623) pptA 1428059..1428790 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  H1W86_RS07380 (STHERMO_1624) - 1428855..1429274 (+) 420 WP_002951675.1 HIT family protein -
  H1W86_RS07385 (STHERMO_1625) - 1429271..1429579 (+) 309 WP_179971427.1 hypothetical protein -
  H1W86_RS09810 (STHERMO_1626) - 1430131..1430301 (-) 171 WP_011226439.1 hypothetical protein -
  H1W86_RS07395 (STHERMO_1627) - 1430371..1431006 (-) 636 WP_179971026.1 DUF4230 domain-containing protein -
  H1W86_RS09990 (STHERMO_1628) - 1431025..1431150 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40085.60 Da        Isoelectric Point: 10.5363

>NTDB_id=1132135 H1W86_RS07370 WP_372433575.1 1427025..1428059(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_1358]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1132135 H1W86_RS07370 WP_372433575.1 1427025..1428059(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

100

0.985

  pptB Streptococcus salivarius strain HSISS4

93.023

100

0.93


Multiple sequence alignment