Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W80_RS02205 Genome accession   NZ_LR822040
Coordinates   402752..403195 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397752..408195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS02185 (STHERMO_0449) - 398317..399069 (-) 753 WP_087009712.1 NUDIX domain-containing protein -
  H1W80_RS02190 (STHERMO_0450) - 399133..400239 (-) 1107 WP_180473414.1 AAA family ATPase -
  H1W80_RS02195 (STHERMO_0451) gdhA 400583..401935 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W80_RS02200 (STHERMO_0452) - 402192..402602 (+) 411 WP_087009714.1 peptide deformylase -
  H1W80_RS02205 (STHERMO_0453) rcrR 402752..403195 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W80_RS02210 (STHERMO_0454) rcrP 403199..405013 (+) 1815 WP_087009715.1 ABC transporter ATP-binding protein Regulator
  H1W80_RS02215 (STHERMO_0455) rcrQ 405003..406781 (+) 1779 WP_087009716.1 ABC transporter ATP-binding protein Regulator
  H1W80_RS02220 (STHERMO_0456) - 406937..407308 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1131988 H1W80_RS02205 WP_002945408.1 402752..403195(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1125]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131988 H1W80_RS02205 WP_002945408.1 402752..403195(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAATAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment