Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H1W80_RS02215 Genome accession   NZ_LR822040
Coordinates   405003..406781 (+) Length   592 a.a.
NCBI ID   WP_087009716.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 400003..411781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS02195 (STHERMO_0451) gdhA 400583..401935 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W80_RS02200 (STHERMO_0452) - 402192..402602 (+) 411 WP_087009714.1 peptide deformylase -
  H1W80_RS02205 (STHERMO_0453) rcrR 402752..403195 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W80_RS02210 (STHERMO_0454) rcrP 403199..405013 (+) 1815 WP_087009715.1 ABC transporter ATP-binding protein Regulator
  H1W80_RS02215 (STHERMO_0455) rcrQ 405003..406781 (+) 1779 WP_087009716.1 ABC transporter ATP-binding protein Regulator
  H1W80_RS02220 (STHERMO_0456) - 406937..407308 (+) 372 WP_224103327.1 GNAT family acetyltransferase -
  H1W80_RS09365 (STHERMO_0458) - 407331..408494 (+) 1164 Protein_378 sensor histidine kinase -
  H1W80_RS02230 (STHERMO_0459) pyrH 408731..409468 (+) 738 WP_002949867.1 UMP kinase -
  H1W80_RS02235 (STHERMO_0460) frr 409483..410040 (+) 558 WP_002949868.1 ribosome recycling factor -
  H1W80_RS02240 (STHERMO_0461) cvfB 410131..410988 (+) 858 WP_014608029.1 RNA-binding virulence regulatory protein CvfB -
  H1W80_RS02245 (STHERMO_0462) - 410997..411212 (+) 216 WP_002944188.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65121.11 Da        Isoelectric Point: 5.0134

>NTDB_id=1131990 H1W80_RS02215 WP_087009716.1 405003..406781(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1125]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKKSSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESDKTAELTDTKGQVVFDHVSFGYTPENTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1131990 H1W80_RS02215 WP_087009716.1 405003..406781(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAAAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGACAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAATACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688

Multiple sequence alignment