Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W87_RS08575 Genome accession   NZ_LR822037
Coordinates   1649373..1650329 (-) Length   318 a.a.
NCBI ID   WP_180478280.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1644373..1655329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS08545 (STHERMO_1926) proC 1644927..1645697 (+) 771 WP_180478278.1 pyrroline-5-carboxylate reductase -
  H1W87_RS08550 (STHERMO_1927) - 1645727..1646389 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  H1W87_RS08555 (STHERMO_1928) - 1646492..1646785 (-) 294 WP_232085688.1 hypothetical protein -
  H1W87_RS09875 (STHERMO_1929) - 1647010..1647435 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  H1W87_RS08565 (STHERMO_1931) - 1647678..1647875 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  H1W87_RS08570 (STHERMO_1932) - 1648124..1649317 (-) 1194 WP_014608740.1 acetate kinase -
  H1W87_RS08575 (STHERMO_1933) comYH 1649373..1650329 (-) 957 WP_180478280.1 class I SAM-dependent methyltransferase Machinery gene
  H1W87_RS08580 (STHERMO_1934) comGG 1650374..1650691 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  H1W87_RS08585 (STHERMO_1935) comYF 1650669..1651106 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W87_RS08590 (STHERMO_1936) comGE 1651090..1651383 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1W87_RS08595 (STHERMO_1937) comGD 1651355..1651783 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  H1W87_RS08600 (STHERMO_1938) comYC 1651743..1652069 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W87_RS08605 (STHERMO_1939) comYB 1652066..1653166 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W87_RS08610 (STHERMO_1940) comYA 1653048..1653989 (-) 942 WP_180478282.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W87_RS08615 (STHERMO_1941) - 1654070..1654432 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35856.02 Da        Isoelectric Point: 4.7751

>NTDB_id=1131906 H1W87_RS08575 WP_180478280.1 1649373..1650329(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1121]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQQKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1131906 H1W87_RS08575 WP_180478280.1 1649373..1650329(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GCAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment