Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   H1W87_RS06665 Genome accession   NZ_LR822037
Coordinates   1274676..1275602 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269676..1280602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS06635 (STHERMO_1479) - 1269754..1270548 (-) 795 WP_180478123.1 HAD-IIB family hydrolase -
  H1W87_RS06640 (STHERMO_1481) - 1270732..1271109 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H1W87_RS06645 (STHERMO_1482) - 1271114..1271812 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H1W87_RS06650 (STHERMO_1483) - 1271824..1272609 (+) 786 WP_002951425.1 hypothetical protein -
  H1W87_RS06655 (STHERMO_1484) amiF 1272659..1273588 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H1W87_RS06660 (STHERMO_1485) amiE 1273581..1274666 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS06665 (STHERMO_1486) amiD 1274676..1275602 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H1W87_RS06670 (STHERMO_1487) amiC 1275602..1277095 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  H1W87_RS06675 - 1277157..1279123 (-) 1967 Protein_1261 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=1131894 H1W87_RS06665 WP_002946409.1 1274676..1275602(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1121]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1131894 H1W87_RS06665 WP_002946409.1 1274676..1275602(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCTATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment