Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W87_RS02265 Genome accession   NZ_LR822037
Coordinates   413916..414359 (+) Length   147 a.a.
NCBI ID   WP_084829390.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 408916..419359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS02245 (STHERMO_0468) - 409430..410191 (-) 762 WP_179966940.1 NUDIX domain-containing protein -
  H1W87_RS02250 - 410255..411361 (-) 1107 Protein_384 AAA family ATPase -
  H1W87_RS02255 (STHERMO_0471) gdhA 411705..413057 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W87_RS02260 (STHERMO_0472) - 413315..413725 (+) 411 WP_011680804.1 peptide deformylase -
  H1W87_RS02265 (STHERMO_0473) rcrR 413916..414359 (+) 444 WP_084829390.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W87_RS02270 (STHERMO_0474) rcrP 414363..416177 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS02275 (STHERMO_0475) rcrQ 416167..417945 (+) 1779 WP_096811879.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS02280 (STHERMO_0476) - 418101..418472 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17043.47 Da        Isoelectric Point: 9.5790

>NTDB_id=1131874 H1W87_RS02265 WP_084829390.1 413916..414359(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1121]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAEIAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131874 H1W87_RS02265 WP_084829390.1 413916..414359(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAATAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment