Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H1W87_RS02270 Genome accession   NZ_LR822037
Coordinates   414363..416177 (+) Length   604 a.a.
NCBI ID   WP_011225560.1    Uniprot ID   Q5M5N3
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 409363..421177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS02245 (STHERMO_0468) - 409430..410191 (-) 762 WP_179966940.1 NUDIX domain-containing protein -
  H1W87_RS02250 - 410255..411361 (-) 1107 Protein_384 AAA family ATPase -
  H1W87_RS02255 (STHERMO_0471) gdhA 411705..413057 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W87_RS02260 (STHERMO_0472) - 413315..413725 (+) 411 WP_011680804.1 peptide deformylase -
  H1W87_RS02265 (STHERMO_0473) rcrR 413916..414359 (+) 444 WP_084829390.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W87_RS02270 (STHERMO_0474) rcrP 414363..416177 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS02275 (STHERMO_0475) rcrQ 416167..417945 (+) 1779 WP_096811879.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS02280 (STHERMO_0476) - 418101..418472 (+) 372 WP_002945426.1 hypothetical protein -
  H1W87_RS09480 (STHERMO_0478) - 418495..419658 (+) 1164 Protein_391 sensor histidine kinase -
  H1W87_RS02290 (STHERMO_0479) pyrH 419895..420632 (+) 738 WP_180478423.1 UMP kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67091.74 Da        Isoelectric Point: 5.4286

>NTDB_id=1131875 H1W87_RS02270 WP_011225560.1 414363..416177(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1121]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDIITLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
SFLAARTASSFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMALTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMEDKVHLFSDMVVYSSYAMQVVMGFMMMMVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDKGKVVGQGTHEELLANNEVYQEIAYSQLSKEELEDGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1131875 H1W87_RS02270 WP_011225560.1 414363..416177(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTATAACCCTCTTATCAACCAAGGGGACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
AGTTTTCTAGCTGCCAGAACAGCATCTAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGCAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGT
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCACA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATGGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGCAACGCAAGGAACTATAAAGGTCGATGGTGTAGATGTGAGATATTACGATCACGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACAGCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCTCGTAAGCCTGAAATCTTGATCTTTGACGACTCCTTCTCAGCTTTGGACTATAAGACCGATCGCAAGT
TGCGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAAAGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAGATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.603

100

0.677

Multiple sequence alignment