Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1X13_RS08885 Genome accession   NZ_LR822034
Coordinates   1725230..1726186 (-) Length   318 a.a.
NCBI ID   WP_180481126.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720230..1731186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS08855 (STHERMO_1986) proC 1720790..1721560 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1X13_RS08860 (STHERMO_1987) - 1721590..1722252 (-) 663 WP_180481124.1 CPBP family intramembrane glutamic endopeptidase -
  H1X13_RS08865 (STHERMO_1988) - 1722349..1722792 (-) 444 WP_180481125.1 CAAX protease -
  H1X13_RS10195 (STHERMO_1989) - 1722866..1723204 (-) 339 WP_224103672.1 CPBP family intramembrane glutamic endopeptidase -
  H1X13_RS10200 (STHERMO_1990) - 1723248..1723523 (-) 276 WP_011681681.1 hypothetical protein -
  H1X13_RS08875 (STHERMO_1991) - 1723535..1723732 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  H1X13_RS08880 (STHERMO_1992) - 1723981..1725174 (-) 1194 WP_096811682.1 acetate kinase -
  H1X13_RS08885 (STHERMO_1993) comYH 1725230..1726186 (-) 957 WP_180481126.1 class I SAM-dependent methyltransferase Machinery gene
  H1X13_RS08890 (STHERMO_1994) comGG 1726231..1726548 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  H1X13_RS08895 (STHERMO_1995) comYF 1726526..1726963 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1X13_RS08900 (STHERMO_1996) comGE 1726947..1727240 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1X13_RS08905 (STHERMO_1997) comYD 1727212..1727640 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1X13_RS08910 (STHERMO_1998) comYC 1727600..1727926 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1X13_RS08915 (STHERMO_1999) comYB 1727923..1729023 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1X13_RS08920 (STHERMO_2000) comGA/cglA/cilD 1728905..1729846 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  H1X13_RS08925 (STHERMO_2001) - 1729927..1730289 (-) 363 WP_180481127.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35866.01 Da        Isoelectric Point: 4.7876

>NTDB_id=1131729 H1X13_RS08885 WP_180481126.1 1725230..1726186(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1049]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSHKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1131729 H1X13_RS08885 WP_180481126.1 1725230..1726186(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCATAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment