Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1X13_RS02190 Genome accession   NZ_LR822034
Coordinates   411928..412371 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 406928..417371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS02170 (STHERMO_0459) - 407447..408201 (-) 755 Protein_384 NUDIX domain-containing protein -
  H1X13_RS02175 - 408265..409372 (-) 1108 Protein_385 AAA family ATPase -
  H1X13_RS02180 (STHERMO_0462) gdhA 409716..411068 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1X13_RS02185 (STHERMO_0463) - 411326..411736 (+) 411 WP_011225559.1 peptide deformylase -
  H1X13_RS02190 (STHERMO_0464) rcrR 411928..412371 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1X13_RS02195 (STHERMO_0465) rcrP 412375..414189 (+) 1815 WP_180481208.1 ABC transporter ATP-binding protein Regulator
  H1X13_RS02200 (STHERMO_0466) rcrQ 414179..415957 (+) 1779 WP_180481209.1 ABC transporter ATP-binding protein Regulator
  H1X13_RS02205 (STHERMO_0467) - 416112..416483 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1131693 H1X13_RS02190 WP_002945408.1 411928..412371(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1049]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131693 H1X13_RS02190 WP_002945408.1 411928..412371(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment