Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H1X13_RS02195 Genome accession   NZ_LR822034
Coordinates   412375..414189 (+) Length   604 a.a.
NCBI ID   WP_180481208.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 407375..419189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS02170 (STHERMO_0459) - 407447..408201 (-) 755 Protein_384 NUDIX domain-containing protein -
  H1X13_RS02175 - 408265..409372 (-) 1108 Protein_385 AAA family ATPase -
  H1X13_RS02180 (STHERMO_0462) gdhA 409716..411068 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1X13_RS02185 (STHERMO_0463) - 411326..411736 (+) 411 WP_011225559.1 peptide deformylase -
  H1X13_RS02190 (STHERMO_0464) rcrR 411928..412371 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1X13_RS02195 (STHERMO_0465) rcrP 412375..414189 (+) 1815 WP_180481208.1 ABC transporter ATP-binding protein Regulator
  H1X13_RS02200 (STHERMO_0466) rcrQ 414179..415957 (+) 1779 WP_180481209.1 ABC transporter ATP-binding protein Regulator
  H1X13_RS02205 (STHERMO_0467) - 416112..416483 (+) 372 WP_224103327.1 GNAT family acetyltransferase -
  H1X13_RS09855 (STHERMO_0469) - 416506..417669 (+) 1164 Protein_392 sensor histidine kinase -
  H1X13_RS02215 (STHERMO_0470) pyrH 417905..418642 (+) 738 WP_002949867.1 UMP kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67162.87 Da        Isoelectric Point: 5.5906

>NTDB_id=1131694 H1X13_RS02195 WP_180481208.1 412375..414189(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1049]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDIITLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
SFLAARTASSFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMALTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIADAMKDKVHLFSDMVVYSSYAMQVVMGFMMMMVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTERKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDKGKVVGQGTHEELLANNEVYQEIAYSQLSKEELEDGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1131694 H1X13_RS02195 WP_180481208.1 412375..414189(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTATAACCCTCTTATCAACCAAGGGGACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
AGTTTTCTAGCTGCCAGAACAGCATCTAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGCAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGATGCCATGAAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATGGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGCAACGCAAGGAACTATAAAGGTCGATGGTGTAGATGTGAGATATTACGATCATGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACAGCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATCTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGAACGCAAGT
TGCGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAAAGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAGATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.273

100

0.674

Multiple sequence alignment