Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   H1W91_RS07700 Genome accession   NZ_LR822032
Coordinates   1475881..1476915 (-) Length   344 a.a.
NCBI ID   WP_375708305.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1470881..1481915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS07675 (STHERMO_1680) ilvD 1471149..1472867 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  H1W91_RS07680 (STHERMO_1681) - 1472980..1474161 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  H1W91_RS07690 (STHERMO_1682) trmB 1474381..1475022 (-) 642 WP_002951658.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H1W91_RS07695 (STHERMO_1683) ccrZ 1475032..1475823 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H1W91_RS07700 (STHERMO_1684) pptB 1475881..1476915 (-) 1035 WP_375708305.1 ABC transporter permease Regulator
  H1W91_RS07705 (STHERMO_1685) pptA 1476915..1477646 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  H1W91_RS07710 (STHERMO_1686) - 1477711..1478130 (+) 420 WP_002891660.1 HIT family protein -
  H1W91_RS07715 (STHERMO_1687) - 1478127..1478435 (+) 309 WP_180477129.1 hypothetical protein -
  H1W91_RS10130 (STHERMO_1688) - 1478477..1478692 (-) 216 WP_096811621.1 hypothetical protein -
  H1W91_RS10135 (STHERMO_1689) - 1478987..1479157 (-) 171 WP_011226439.1 hypothetical protein -
  H1W91_RS07725 (STHERMO_1690) - 1479227..1479862 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  H1W91_RS10325 - 1479881..1480006 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40112.62 Da        Isoelectric Point: 10.5363

>NTDB_id=1131598 H1W91_RS07700 WP_375708305.1 1475881..1476915(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_1050]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1131598 H1W91_RS07700 WP_375708305.1 1475881..1476915(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATTCTGGTTCTTCTTTTTTTGCTGGGTTTTGTTTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAACA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.256

100

0.983

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927


Multiple sequence alignment