Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W95_RS02240 Genome accession   NZ_LR822030
Coordinates   414803..415246 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1046     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 409803..420246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W95_RS02220 (STHERMO_0466) - 409822..410928 (-) 1107 WP_014608024.1 AAA family ATPase -
  H1W95_RS02225 (STHERMO_0467) - 411037..412212 (+) 1176 WP_179971022.1 IS256-like element IS1191 family transposase -
  H1W95_RS02230 (STHERMO_0469) gdhA 412593..413945 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W95_RS02235 (STHERMO_0470) - 414203..414613 (+) 411 WP_011680804.1 peptide deformylase -
  H1W95_RS02240 (STHERMO_0471) rcrR 414803..415246 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W95_RS02245 (STHERMO_0472) rcrP 415250..417064 (+) 1815 WP_180483490.1 ABC transporter ATP-binding protein Regulator
  H1W95_RS02250 (STHERMO_0473) rcrQ 417054..418832 (+) 1779 WP_180483492.1 ABC transporter ATP-binding protein Regulator
  H1W95_RS02255 (STHERMO_0474) - 418988..419359 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1131452 H1W95_RS02240 WP_002945408.1 414803..415246(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1046]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131452 H1W95_RS02240 WP_002945408.1 414803..415246(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1046]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment