Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H1W95_RS02250 Genome accession   NZ_LR822030
Coordinates   417054..418832 (+) Length   592 a.a.
NCBI ID   WP_180483492.1    Uniprot ID   A0AAU9H6G3
Organism   Streptococcus thermophilus isolate STH_CIRM_1046     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 412054..423832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W95_RS02230 (STHERMO_0469) gdhA 412593..413945 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W95_RS02235 (STHERMO_0470) - 414203..414613 (+) 411 WP_011680804.1 peptide deformylase -
  H1W95_RS02240 (STHERMO_0471) rcrR 414803..415246 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W95_RS02245 (STHERMO_0472) rcrP 415250..417064 (+) 1815 WP_180483490.1 ABC transporter ATP-binding protein Regulator
  H1W95_RS02250 (STHERMO_0473) rcrQ 417054..418832 (+) 1779 WP_180483492.1 ABC transporter ATP-binding protein Regulator
  H1W95_RS02255 (STHERMO_0474) - 418988..419359 (+) 372 WP_041829277.1 hypothetical protein -
  H1W95_RS10555 - 419382..420545 (+) 1164 Protein_397 sensor histidine kinase -
  H1W95_RS02265 (STHERMO_0478) pyrH 420781..421518 (+) 738 WP_180483494.1 UMP kinase -
  H1W95_RS02270 (STHERMO_0479) frr 421533..422090 (+) 558 WP_002949868.1 ribosome recycling factor -
  H1W95_RS02275 (STHERMO_0480) cvfB 422181..423038 (+) 858 WP_100262402.1 RNA-binding virulence regulatory protein CvfB -
  H1W95_RS02280 (STHERMO_0481) - 423047..423262 (+) 216 WP_002944188.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65160.28 Da        Isoelectric Point: 5.0166

>NTDB_id=1131454 H1W95_RS02250 WP_180483492.1 417054..418832(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1046]
MENKPKISSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMVANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1131454 H1W95_RS02250 WP_180483492.1 417054..418832(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1046]
ATGGAAAATAAGCCAAAAATATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATTTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGGCAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGTAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688

Multiple sequence alignment