Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W89_RS07325 Genome accession   NZ_LR822029
Coordinates   1405086..1405529 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1035     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400086..1410529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W89_RS07310 (STHERMO_1618) - 1400973..1401344 (-) 372 WP_041829277.1 hypothetical protein -
  H1W89_RS07315 (STHERMO_1619) rcrQ 1401500..1403278 (-) 1779 WP_180474602.1 ABC transporter ATP-binding protein Regulator
  H1W89_RS07320 (STHERMO_1620) rcrP 1403268..1405082 (-) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  H1W89_RS07325 (STHERMO_1621) rcrR 1405086..1405529 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W89_RS07330 (STHERMO_1622) - 1405719..1406129 (-) 411 WP_011680804.1 peptide deformylase -
  H1W89_RS07335 (STHERMO_1623) gdhA 1406386..1407738 (-) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  H1W89_RS07340 - 1408170..1409192 (+) 1023 Protein_1405 AAA family ATPase -
  H1W89_RS07345 (STHERMO_1626) - 1409256..1410010 (+) 755 Protein_1406 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1131419 H1W89_RS07325 WP_002945408.1 1405086..1405529(-) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1035]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131419 H1W89_RS07325 WP_002945408.1 1405086..1405529(-) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment