Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H1W89_RS07315 Genome accession   NZ_LR822029
Coordinates   1401500..1403278 (-) Length   592 a.a.
NCBI ID   WP_180474602.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1035     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1396500..1408278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W89_RS07285 (STHERMO_1611) - 1397070..1397285 (-) 216 WP_002944188.1 YozE family protein -
  H1W89_RS07290 (STHERMO_1612) cvfB 1397294..1398151 (-) 858 WP_180474601.1 RNA-binding virulence regulatory protein CvfB -
  H1W89_RS07295 (STHERMO_1613) frr 1398242..1398799 (-) 558 WP_002949868.1 ribosome recycling factor -
  H1W89_RS07300 (STHERMO_1614) pyrH 1398814..1399551 (-) 738 WP_002949867.1 UMP kinase -
  H1W89_RS10320 - 1399787..1400950 (-) 1164 Protein_1398 sensor histidine kinase -
  H1W89_RS07310 (STHERMO_1618) - 1400973..1401344 (-) 372 WP_041829277.1 hypothetical protein -
  H1W89_RS07315 (STHERMO_1619) rcrQ 1401500..1403278 (-) 1779 WP_180474602.1 ABC transporter ATP-binding protein Regulator
  H1W89_RS07320 (STHERMO_1620) rcrP 1403268..1405082 (-) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  H1W89_RS07325 (STHERMO_1621) rcrR 1405086..1405529 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W89_RS07330 (STHERMO_1622) - 1405719..1406129 (-) 411 WP_011680804.1 peptide deformylase -
  H1W89_RS07335 (STHERMO_1623) gdhA 1406386..1407738 (-) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65048.06 Da        Isoelectric Point: 5.0166

>NTDB_id=1131417 H1W89_RS07315 WP_180474602.1 1401500..1403278(-) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1035]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFAAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFVGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMVANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1131417 H1W89_RS07315 WP_180474602.1 1401500..1403278(-) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCGTTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCGCTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGTAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCTATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCGTCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCACGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACGACTATTGTTAACTTGCTTATGAAG
TTTTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAACGTGAAACCGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGTAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.581

100

0.686

Multiple sequence alignment