Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   H0510_RS07320 Genome accession   NZ_LR822019
Coordinates   1404709..1405743 (-) Length   344 a.a.
NCBI ID   WP_415670199.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1399709..1410743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS07295 (STHERMO_1614) ilvD 1399961..1401679 (-) 1719 WP_024010047.1 dihydroxy-acid dehydratase -
  H0510_RS07300 (STHERMO_1615) - 1401792..1402973 (+) 1182 WP_179966766.1 NAD(P)/FAD-dependent oxidoreductase -
  H0510_RS07310 (STHERMO_1616) trmB 1403209..1403850 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H0510_RS07315 (STHERMO_1617) ccrZ 1403860..1404651 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H0510_RS07320 (STHERMO_1618) pptB 1404709..1405743 (-) 1035 WP_415670199.1 ABC transporter permease Regulator
  H0510_RS07325 (STHERMO_1619) pptA 1405743..1406474 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  H0510_RS07330 (STHERMO_1620) - 1406539..1406958 (+) 420 WP_011226437.1 HIT family protein -
  H0510_RS07335 (STHERMO_1621) - 1406955..1407263 (+) 309 WP_179966768.1 hypothetical protein -
  H0510_RS09665 (STHERMO_1622) - 1407815..1407985 (-) 171 WP_011226439.1 hypothetical protein -
  H0510_RS07345 (STHERMO_1623) - 1408055..1408690 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  H0510_RS09875 (STHERMO_1624) - 1408709..1408834 (-) 126 WP_260215148.1 hypothetical protein -
  H0510_RS07350 (STHERMO_1625) - 1409311..1410560 (+) 1250 Protein_1410 ISL3 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40168.73 Da        Isoelectric Point: 10.5363

>NTDB_id=1131040 H0510_RS07320 WP_415670199.1 1404709..1405743(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_772]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDVILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLLMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1131040 H0510_RS07320 WP_415670199.1 1404709..1405743(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_772]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGTCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAACA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTTTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.674

100

0.977

  pptB Streptococcus salivarius strain HSISS4

92.151

100

0.922


Multiple sequence alignment