Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H0511_RS02320 Genome accession   NZ_LR822017
Coordinates   430786..432564 (+) Length   592 a.a.
NCBI ID   WP_179974288.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 425786..437564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS02300 (STHERMO_0470) gdhA 426325..427677 (+) 1353 WP_179974286.1 NADP-specific glutamate dehydrogenase -
  H0511_RS02305 (STHERMO_0471) - 427935..428345 (+) 411 WP_100285038.1 peptide deformylase -
  H0511_RS02310 (STHERMO_0472) rcrR 428535..428978 (+) 444 WP_179972686.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0511_RS02315 (STHERMO_0473) rcrP 428982..430796 (+) 1815 WP_179974287.1 ABC transporter ATP-binding protein Regulator
  H0511_RS02320 (STHERMO_0474) rcrQ 430786..432564 (+) 1779 WP_179974288.1 ABC transporter ATP-binding protein Regulator
  H0511_RS02325 (STHERMO_0475) - 432721..433158 (+) 438 WP_232086205.1 GNAT family acetyltransferase -
  H0511_RS02330 - 433435..434036 (+) 602 Protein_408 GTP pyrophosphokinase -
  H0511_RS02335 - 434089..434767 (+) 679 Protein_409 response regulator transcription factor -
  H0511_RS02340 (STHERMO_0483) - 434780..436012 (+) 1233 Protein_410 sensor histidine kinase -
  H0511_RS02345 (STHERMO_0484) pyrH 436248..436985 (+) 738 WP_179972689.1 UMP kinase -
  H0511_RS02350 (STHERMO_0485) frr 437000..437557 (+) 558 WP_024704207.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65098.02 Da        Isoelectric Point: 5.2114

>NTDB_id=1130959 H0511_RS02320 WP_179974288.1 430786..432564(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_336]
MENKSKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKTGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVATITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMFFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGFTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHNQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALIKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTKEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1130959 H0511_RS02320 WP_179974288.1 430786..432564(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGGAAAATAAGTCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATCGTTGGAGCCATTATTTCAGCTGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCGACTAAGACGGGGGTTATTCCGGGCATTGATTTAGACAAGGTGGGCAGTATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTGCAAAGTTTTACCGTTGCAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGCCTGGGTACTCTAATTACTTCAAGCGTTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGTCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCTATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGTTTTTCATCGG
GAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTCGTATCTTTGAATTTTTGGAAGAAAAGGATATGGACGACGAGTCAGTCAAGACAGCAGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTTTACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTTCTTATGAAA
TTCTATAATATCGATCAAGGCCGTATCACTATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATAATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGGGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCCGTGGGTGTTCATCACTTCATCACTACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTATTAAGGATTCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAGATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGAAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.243

100

0.682

Multiple sequence alignment