Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H0511_RS02315 Genome accession   NZ_LR822017
Coordinates   428982..430796 (+) Length   604 a.a.
NCBI ID   WP_179974287.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 423982..435796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS02295 - 424803..425915 (-) 1113 Protein_401 AAA family ATPase -
  H0511_RS02300 (STHERMO_0470) gdhA 426325..427677 (+) 1353 WP_179974286.1 NADP-specific glutamate dehydrogenase -
  H0511_RS02305 (STHERMO_0471) - 427935..428345 (+) 411 WP_100285038.1 peptide deformylase -
  H0511_RS02310 (STHERMO_0472) rcrR 428535..428978 (+) 444 WP_179972686.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0511_RS02315 (STHERMO_0473) rcrP 428982..430796 (+) 1815 WP_179974287.1 ABC transporter ATP-binding protein Regulator
  H0511_RS02320 (STHERMO_0474) rcrQ 430786..432564 (+) 1779 WP_179974288.1 ABC transporter ATP-binding protein Regulator
  H0511_RS02325 (STHERMO_0475) - 432721..433158 (+) 438 WP_232086205.1 GNAT family acetyltransferase -
  H0511_RS02330 - 433435..434036 (+) 602 Protein_408 GTP pyrophosphokinase -
  H0511_RS02335 - 434089..434767 (+) 679 Protein_409 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67124.83 Da        Isoelectric Point: 5.7774

>NTDB_id=1130958 H0511_RS02315 WP_179974287.1 428982..430796(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_336]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDTPGMRMLLMSFAGFMASVVV
SFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLIALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIASAMEDKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDVTQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNTPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAKKTQDMTKLIVAQRISTIMDA
DQILVLDSGKVVGQGTHEELLANNEVYQEIAYSQLPKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1130958 H0511_RS02315 WP_179974287.1 428982..430796(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTACAACCCTCTTATCAACCAAGGGGACTAAGGCGTCGGATA
TTTTTGCTTGGAATACGGATACCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTCGTGGTT
AGTTTTCTAGCTGCCAGAACAGCAGCTAGTTTTACTACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACTCGTACGACAAACGATATTACACAATTACAGCTGGTAC
TGACCATGGGATTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTATTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATTTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACCGATCCAACTAAGATTGCTAGTGCCATGGAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGTAACGCAAGGAACTATCAAGGTCGATGGTGTAGATGTGAGATATTACGATCACGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACACCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATCTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGCAAAT
TGCGTCAAGAATTGGCTAAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATTTCTACTATTATGGATGCT
GACCAAATTTTAGTTCTTGATAGTGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGCCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.769

100

0.679

Multiple sequence alignment