Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   H0504_RS06160 Genome accession   NZ_LR822011
Coordinates   1195496..1196722 (-) Length   408 a.a.
NCBI ID   WP_002950151.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190496..1201722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS06130 (STHERMO_1375) plsY 1190866..1191507 (+) 642 WP_002950167.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  H0504_RS06135 (STHERMO_1376) - 1191621..1191980 (-) 360 WP_002950165.1 helix-hairpin-helix domain-containing protein -
  H0504_RS06140 (STHERMO_1377) - 1192052..1192306 (-) 255 WP_002950164.1 DUF1912 family protein -
  H0504_RS06145 (STHERMO_1378) mmuM 1192419..1193369 (-) 951 WP_041828170.1 homocysteine S-methyltransferase -
  H0504_RS06150 (STHERMO_1379) - 1193381..1194757 (-) 1377 WP_179971582.1 amino acid permease -
  H0504_RS06155 (STHERMO_1380) yihA 1194887..1195486 (-) 600 WP_002950154.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  H0504_RS06160 (STHERMO_1381) clpX 1195496..1196722 (-) 1227 WP_002950151.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  H0504_RS06165 (STHERMO_1382) - 1196740..1196910 (-) 171 WP_002886174.1 hypothetical protein -
  H0504_RS06170 (STHERMO_1383) - 1196915..1197418 (-) 504 WP_011225671.1 dihydrofolate reductase -
  H0504_RS06175 (STHERMO_1384) - 1197526..1198386 (-) 861 WP_002950145.1 thymidylate synthase -
  H0504_RS06180 (STHERMO_1385) - 1198708..1199883 (+) 1176 WP_011680902.1 hydroxymethylglutaryl-CoA synthase -
  H0504_RS06185 (STHERMO_1386) - 1199876..1201147 (+) 1272 WP_011225668.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45063.49 Da        Isoelectric Point: 4.4119

>NTDB_id=1130674 H0504_RS06160 WP_002950151.1 1195496..1196722(-) (clpX) [Streptococcus thermophilus isolate STH_CIRM_23]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREETAEEVLADLAETPKPKELLDILNNYVVGQDRV
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIPEFIGRLPVLATLEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKEAVDGK
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1130674 H0504_RS06160 WP_002950151.1 1195496..1196722(-) (clpX) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGGCTGGAAATCGTAATGAAGAGATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTGAAGAAAATTATCGC
CGGTAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAACGGCTGAAGAAGTTT
TAGCTGACTTGGCTGAAACGCCAAAGCCAAAAGAACTTTTAGATATTTTGAACAACTATGTCGTGGGGCAAGATCGTGTC
AAACGTGCCTTGGCAGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGATAATGATGTGGA
CTTGCAAAAATCAAATATCCTCATGATTGGACCAACAGGGTCAGGGAAAACTTACTTAGCTCAGACTTTGGCTCGTAGTT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTAATTCAAGCGGCAGACTTTAATATTGAACGTGCGGAACGTGGGATCATCTACGTGGACGAGATTGATAAGAT
TGCCAAAAAAGGTGAGAATGTTTCAATCACTCGTGATGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATTG
AGGGAACAGTGGCTAGTGTTCCACCTCAAGGTGGTCGTAAACACCCTAATCAAGAGATGATTCAAATTGATACTAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGGTT
TGGTCAAAATAATAAAGCAATTGATGACGAATCATCATACATGAAAGAAATTGTGGCTGAAGATATCCAAAAATTTGGAC
TTATCCCTGAATTTATCGGACGTTTGCCAGTTCTTGCGACCCTTGAACAGTTAACGGTTGACGACTTGGTGCGTATTTTG
ACAGAGCCTAGGAATGCCTTGGTGAAGCAGTATCAAACCCTCTTGTCTTATGATGGGGTTGAACTTGAGTTTGACCAGGA
TGCCCTTGAGGCTATTGCAAGTAAGGCAATTGAACGTAAGACTGGTGCGCGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTTATGTTTGAAATCCCTAGTCTGGAAGATGTCACTAAGGTTCGTATCACCAAAGAAGCTGTTGATGGGAAA
GCTGCTCCAGTATTGGAAACAGCATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.509

100

0.887
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.757

99.755

0.566

Multiple sequence alignment