Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   H0504_RS02455 Genome accession   NZ_LR822011
Coordinates   469111..470037 (+) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 464111..475037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS02445 (STHERMO_0522) amiA 465589..467556 (+) 1968 WP_179971753.1 peptide ABC transporter substrate-binding protein Regulator
  H0504_RS02450 (STHERMO_0523) amiC 467618..469111 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  H0504_RS02455 (STHERMO_0524) amiD 469111..470037 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0504_RS02460 (STHERMO_0525) amiE 470047..471132 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0504_RS02465 (STHERMO_0526) amiF 471125..472054 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0504_RS02470 (STHERMO_0527) - 472104..472889 (-) 786 WP_002951425.1 hypothetical protein -
  H0504_RS02475 (STHERMO_0528) - 472901..473599 (-) 699 WP_179971775.1 ABC transporter ATP-binding protein -
  H0504_RS02480 (STHERMO_0529) - 473604..473981 (-) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0504_RS02485 (STHERMO_0531) - 474165..474959 (+) 795 WP_011226299.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=1130659 H0504_RS02455 WP_002946409.1 469111..470037(+) (amiD) [Streptococcus thermophilus isolate STH_CIRM_23]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1130659 H0504_RS02455 WP_002946409.1 469111..470037(+) (amiD) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment