Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0504_RS02465 Genome accession   NZ_LR822011
Coordinates   471125..472054 (+) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 466125..477054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS02450 (STHERMO_0523) amiC 467618..469111 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  H0504_RS02455 (STHERMO_0524) amiD 469111..470037 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0504_RS02460 (STHERMO_0525) amiE 470047..471132 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0504_RS02465 (STHERMO_0526) amiF 471125..472054 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0504_RS02470 (STHERMO_0527) - 472104..472889 (-) 786 WP_002951425.1 hypothetical protein -
  H0504_RS02475 (STHERMO_0528) - 472901..473599 (-) 699 WP_179971775.1 ABC transporter ATP-binding protein -
  H0504_RS02480 (STHERMO_0529) - 473604..473981 (-) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0504_RS02485 (STHERMO_0531) - 474165..474959 (+) 795 WP_011226299.1 HAD hydrolase family protein -
  H0504_RS02490 (STHERMO_0532) - 474952..475767 (+) 816 WP_011226298.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=1130661 H0504_RS02465 WP_002951426.1 471125..472054(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_23]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1130661 H0504_RS02465 WP_002951426.1 471125..472054(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTATACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment