Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   KR100_RS00900 Genome accession   NZ_CP006269
Coordinates   172874..174595 (-) Length   573 a.a.
NCBI ID   WP_204207798.1    Uniprot ID   -
Organism   Synechococcus sp. KORDI-100 strain KORDI 100     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167874..179595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR100_RS00880 (KR100_00895) msrB 168801..169295 (+) 495 WP_038542435.1 peptide-methionine (R)-S-oxide reductase MsrB -
  KR100_RS00885 (KR100_00900) - 169267..170514 (+) 1248 WP_038542437.1 NAD(P)/FAD-dependent oxidoreductase -
  KR100_RS00890 (KR100_00905) - 170508..171767 (-) 1260 WP_038542439.1 type II secretion system F family protein -
  KR100_RS00895 (KR100_00910) pilT 171787..172863 (-) 1077 WP_038542441.1 type IV pilus twitching motility protein PilT Machinery gene
  KR100_RS00900 (KR100_00915) pilB/pilB1 172874..174595 (-) 1722 WP_204207798.1 GspE/PulE family protein Machinery gene
  KR100_RS00905 (KR100_00920) grpE 174833..175513 (+) 681 WP_038542444.1 nucleotide exchange factor GrpE -
  KR100_RS00910 (KR100_00925) dnaJ 175513..176640 (+) 1128 WP_038542447.1 molecular chaperone DnaJ -
  KR100_RS00915 (KR100_00930) - 176640..176867 (+) 228 WP_038542448.1 sulfurtransferase TusA family protein -
  KR100_RS00920 (KR100_00935) rsgA 176892..177773 (+) 882 WP_038547552.1 ribosome small subunit-dependent GTPase A -
  KR100_RS00925 (KR100_00940) - 177748..178089 (-) 342 WP_038542450.1 YbaB/EbfC family nucleoid-associated protein -
  KR100_RS00930 (KR100_00945) murB 178123..179007 (-) 885 WP_038542452.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62782.92 Da        Isoelectric Point: 4.7514

>NTDB_id=113065 KR100_RS00900 WP_204207798.1 172874..174595(-) (pilB/pilB1) [Synechococcus sp. KORDI-100 strain KORDI 100]
MDLDGWKAIPAIPVSLDEHHLAVAVPSHWEGPQGEELVSRLSKLNREIVLQPALQSDLEAAWTNSQSASNSETQSAAASA
ADAAGTSETNESSSQDVEETAASYLEEFSAEGVLEEDPEEQAQINSSTVDLEESLRDAEASPVVTLVDRILLQAMSVSAS
DIHVEPQQKGLRLRYRQDGVLQQYIEPLPSRLIPAVTSRFKILADLDIAERRQAQDGRIRRRYRERVIDFRVNTLPSRFG
EKVCLRLLDSSATQLGLDKLISNPDTLSIVRDLGAKPFGMILVTGPTGSGKSTTLYSLLAERNDPGINISTVEDPIEYTL
PGITQCQVNREKGFDFATALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLSTLHANDAPSTIARLDEMGVEPFM
VSAALIGIVSQRLMRRVCTACRVPYHPDEQELGRFGLMASSESKVTFYKAHHHAGNEKVCPKCQGSGYKGRVGVYEVLRM
NEEIATVVSKGATTDTIRQLALESGMVTLLGYSLQLVREGHTTLEEVGRMILTDSGLESERRARALSTMTCRGCGAGLQE
SWLECPYCLTERL

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=113065 KR100_RS00900 WP_204207798.1 172874..174595(-) (pilB/pilB1) [Synechococcus sp. KORDI-100 strain KORDI 100]
ATGGACCTGGATGGCTGGAAAGCGATCCCTGCCATTCCGGTGAGCCTGGATGAGCACCACCTGGCCGTCGCCGTTCCGAG
TCACTGGGAGGGCCCGCAGGGGGAGGAGCTCGTTTCGCGCCTCTCCAAGCTCAATCGGGAGATTGTTCTGCAGCCGGCCT
TGCAGAGCGATCTGGAAGCGGCGTGGACCAACTCCCAGTCCGCTTCAAACAGCGAAACGCAATCCGCTGCAGCCAGCGCA
GCCGATGCGGCGGGCACCTCTGAAACCAATGAATCCTCCAGCCAGGACGTTGAAGAGACGGCCGCTTCCTATCTGGAGGA
ATTCAGCGCGGAAGGGGTTCTGGAGGAAGACCCGGAAGAGCAGGCACAGATCAACAGCAGCACCGTCGATCTCGAGGAAA
GCCTGAGGGATGCCGAGGCATCACCGGTGGTGACCCTGGTGGACCGAATCCTGCTGCAGGCGATGTCGGTCAGCGCCAGC
GACATTCATGTGGAACCTCAGCAGAAAGGTCTGCGACTGCGCTACCGACAGGACGGCGTGCTGCAGCAGTACATCGAGCC
GCTGCCCAGTCGTCTGATTCCTGCCGTTACGTCGCGTTTCAAAATTCTGGCTGACCTCGACATCGCCGAACGACGTCAGG
CCCAGGACGGTCGGATCCGCCGCAGATATCGCGAGCGCGTGATTGATTTCAGGGTCAACACCCTGCCAAGCCGCTTCGGT
GAAAAAGTCTGTCTGCGACTGCTGGACAGCAGCGCGACGCAACTGGGGCTCGACAAGCTGATCAGCAACCCCGACACCTT
GAGCATTGTTCGGGACCTGGGAGCCAAGCCGTTCGGAATGATCCTCGTAACAGGGCCGACCGGCTCAGGAAAATCAACGA
CGCTGTATTCCCTGCTGGCTGAGCGCAACGACCCCGGCATCAACATCTCCACGGTGGAGGATCCGATCGAGTACACCCTA
CCGGGCATCACCCAATGTCAGGTGAATCGCGAGAAGGGCTTCGACTTCGCGACGGCCCTGCGGGCCTTCATGCGGCAGGA
CCCCGACGTGTTGCTGGTGGGGGAAACCAGGGATCTGGAAACTGCGAAAACCGCGATCGAAGCCGCACTCACGGGGCACC
TGGTCCTCAGCACCCTGCACGCCAATGACGCTCCCAGCACGATCGCCCGTCTCGATGAGATGGGTGTGGAGCCATTCATG
GTGTCTGCCGCACTGATTGGCATCGTTTCCCAGCGTCTGATGAGAAGGGTCTGCACGGCCTGCCGGGTTCCCTACCACCC
GGACGAACAGGAACTCGGACGTTTCGGACTGATGGCGAGCAGCGAATCCAAGGTGACCTTCTACAAAGCCCACCATCACG
CCGGAAACGAAAAGGTCTGCCCGAAATGCCAGGGAAGCGGGTACAAGGGTCGCGTCGGGGTCTACGAAGTCCTCCGCATG
AATGAAGAGATCGCCACCGTGGTCTCGAAGGGAGCAACCACCGACACGATTCGGCAGCTTGCCCTGGAGTCGGGCATGGT
GACCCTGCTGGGCTACAGCCTTCAGTTGGTACGCGAGGGACACACCACCCTCGAGGAGGTTGGCCGGATGATCCTCACGG
ATTCAGGGCTGGAATCCGAGCGTAGAGCTCGCGCGCTCAGCACAATGACCTGTAGGGGGTGTGGTGCCGGTCTCCAGGAG
TCCTGGTTGGAATGCCCTTACTGCCTGACTGAACGCCTGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(150-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

66.292

77.661

0.515

Multiple sequence alignment