Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STHERMO_RS08640 Genome accession   NZ_LR822006
Coordinates   1663125..1664081 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus isolate STH_CIRM_16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1658125..1669081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHERMO_RS08610 (STHERMO_1928) proC 1658675..1659445 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STHERMO_RS08615 (STHERMO_1929) - 1659475..1660137 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  STHERMO_RS08620 (STHERMO_1931) - 1660240..1660688 (-) 449 Protein_1642 CAAX protease -
  STHERMO_RS09945 (STHERMO_1932) - 1660762..1661187 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  STHERMO_RS08630 (STHERMO_1934) - 1661430..1661627 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STHERMO_RS08635 (STHERMO_1935) - 1661876..1663069 (-) 1194 WP_022096898.1 acetate kinase -
  STHERMO_RS08640 (STHERMO_1936) comYH 1663125..1664081 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STHERMO_RS08645 (STHERMO_1937) comGG 1664126..1664443 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STHERMO_RS08650 (STHERMO_1938) comYF 1664421..1664858 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STHERMO_RS08655 (STHERMO_1939) comGE 1664842..1665135 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STHERMO_RS08660 (STHERMO_1940) comYD 1665107..1665535 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STHERMO_RS08665 (STHERMO_1941) comYC 1665495..1665821 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STHERMO_RS08670 (STHERMO_1942) comYB 1665818..1666918 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  STHERMO_RS08675 (STHERMO_1943) comGA/cglA/cilD 1666800..1667741 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  STHERMO_RS08680 (STHERMO_1944) - 1667822..1668184 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1130462 STHERMO_RS08640 WP_011226622.1 1663125..1664081(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_16]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1130462 STHERMO_RS08640 WP_011226622.1 1663125..1664081(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_16]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment