Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   L1X59_RS15695 Genome accession   NZ_LR813086
Coordinates   3288412..3288798 (-) Length   128 a.a.
NCBI ID   WP_234686884.1    Uniprot ID   A0AA35D8K4
Organism   Comamonas aquatica isolate BB1454     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3283412..3293798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1X59_RS15680 (TML_03102) - 3285190..3287424 (-) 2235 WP_234686882.1 methyl-accepting chemotaxis protein -
  L1X59_RS15685 (TML_03103) - 3287449..3287991 (-) 543 WP_234686883.1 chemotaxis protein CheW -
  L1X59_RS15690 (TML_03104) - 3288003..3288374 (-) 372 WP_042415197.1 response regulator transcription factor -
  L1X59_RS15695 (TML_03105) pilG 3288412..3288798 (-) 387 WP_234686884.1 response regulator Regulator
  L1X59_RS15700 (TML_03106) - 3288858..3289010 (-) 153 WP_042415201.1 rubredoxin -
  L1X59_RS15705 (TML_03107) thiD 3289122..3290111 (+) 990 WP_234686885.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L1X59_RS15710 (TML_03108) hemL 3290095..3291399 (+) 1305 WP_042415205.1 glutamate-1-semialdehyde 2,1-aminomutase -
  L1X59_RS15715 (TML_03109) - 3291458..3292063 (-) 606 WP_234686886.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14216.42 Da        Isoelectric Point: 7.7488

>NTDB_id=1130410 L1X59_RS15695 WP_234686884.1 3288412..3288798(-) (pilG) [Comamonas aquatica isolate BB1454]
MSAANASFKVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALAKVKDFQPQLIFCDILMPKLDGYQTCAIIKRNAHFS
DTPIVMLSSKDGVFDKARGRMVGCQEYLTKPFSKDQLLQAVQQFGRTA

Nucleotide


Download         Length: 387 bp        

>NTDB_id=1130410 L1X59_RS15695 WP_234686884.1 3288412..3288798(-) (pilG) [Comamonas aquatica isolate BB1454]
TTGAGTGCAGCAAACGCATCGTTCAAGGTGCTGGTTGTCGATGACAGCAATACGATCCGCCGCAGTGCCGAGATCTTCCT
CAAGCAAGGGGGGCACGAGGTGCTCCTGGCCGAGGATGGCTTCGACGCGCTGGCCAAGGTCAAAGACTTTCAGCCGCAGC
TGATTTTTTGCGACATCCTGATGCCCAAGCTGGATGGCTACCAGACCTGCGCCATCATCAAGCGCAATGCCCATTTTTCG
GACACGCCGATCGTCATGCTGTCTTCCAAGGACGGCGTCTTCGACAAGGCCCGCGGCAGGATGGTGGGGTGCCAGGAATA
CCTCACCAAGCCGTTCTCCAAGGATCAGTTGCTGCAGGCCGTGCAACAGTTCGGACGCACCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.098

96.094

0.539

Multiple sequence alignment