Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   L1Z78_RS27495 Genome accession   NZ_LR813084
Coordinates   6028845..6030461 (-) Length   538 a.a.
NCBI ID   WP_234639471.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6023845..6035461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS27480 (TML_05461) - 6024451..6025296 (-) 846 WP_234639468.1 hypothetical protein -
  L1Z78_RS27485 (TML_05462) - 6025370..6026509 (-) 1140 WP_234639469.1 slipin family protein -
  L1Z78_RS27490 (TML_05463) rtcR 6027204..6028823 (+) 1620 WP_234639470.1 RNA repair transcriptional activator RtcR -
  L1Z78_RS27495 (TML_05464) rpoN/rpoN1 6028845..6030461 (-) 1617 WP_234639471.1 RNA polymerase factor sigma-54 Machinery gene
  L1Z78_RS27500 (TML_05465) lptB 6030516..6031304 (-) 789 WP_234639472.1 LPS export ABC transporter ATP-binding protein -
  L1Z78_RS27505 (TML_05466) lptA 6031301..6031954 (-) 654 WP_234639473.1 lipopolysaccharide transport periplasmic protein LptA -
  L1Z78_RS27510 (TML_05467) - 6032124..6032774 (-) 651 WP_234639474.1 thiol:disulfide interchange protein DsbA/DsbL -
  L1Z78_RS27515 (TML_05468) - 6032850..6033530 (-) 681 WP_234639475.1 SPOR domain-containing protein -
  L1Z78_RS27520 (TML_05469) argS 6033552..6035249 (-) 1698 WP_234639476.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 58807.83 Da        Isoelectric Point: 4.6655

>NTDB_id=1130399 L1Z78_RS27495 WP_234639471.1 6028845..6030461(-) (rpoN/rpoN1) [Delftia tsuruhatensis isolate BB1455]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELATEEGGNDAAAGSAEPGGAGAEGADSFADSR
ADAPAATAEWEPSAEASAGDAVEASGTAESLSWEGDGQGTSGSDDRDWGSDAPSSRTRGQGDDDETDATELARSGESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPIEELAQGLAADDMEEREELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDLLADARREGDGGSEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALALIARLEPRPGRR
FADVQRQIIVPDVIVRPVRSGAGRVEFSVQLNPDVMPRLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVSAEDPRKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=1130399 L1Z78_RS27495 WP_234639471.1 6028845..6030461(-) (rpoN/rpoN1) [Delftia tsuruhatensis isolate BB1455]
TTGAAGCCCGGGCTTTCGCTGCGTGTCTCCCAGCATCTTTCGCTCACGCCGCAGCTGCAGCAGTCCATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTCGAACAGATGCTGGGCGACAACCCTTTCCTGGAGCTGGCGACCGAGGAGG
GCGGCAACGATGCCGCCGCAGGCTCCGCCGAACCCGGCGGTGCCGGTGCCGAAGGCGCGGACTCCTTTGCGGACAGCCGT
GCGGATGCGCCGGCTGCCACGGCGGAGTGGGAGCCGTCTGCGGAGGCTTCGGCCGGCGATGCCGTGGAAGCCTCCGGCAC
GGCGGAGTCCCTGAGCTGGGAAGGGGACGGCCAGGGCACATCGGGCTCCGATGACCGCGACTGGGGCAGCGATGCGCCTT
CCAGCCGCACGCGTGGCCAGGGCGATGATGACGAGACGGATGCCACGGAGCTGGCCCGCAGCGGCGAGAGCCTGACCGAC
CACCTGCACCGCCAGGCCTTGAGCCTGCGCCTGGGCGAGGTGGATCGCGCCGCGCTGCGGTTCCTGATCGAGAACCTCAA
CGACGACGGCTATCTCGAGGACCCGATCGAGGAACTGGCCCAGGGCCTGGCCGCTGATGACATGGAGGAGCGAGAGGAGC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGTGGGAGTGGGCGCCCGCGACCTGGCCGAG
TGCCTGACGCTGCAGCTGCGTGACCTGCTGGCGGATGCCCGGCGCGAGGGCGACGGCGGCAGCGAGGACGAGGACCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGTGCCCAGCCCATGGACCTGCTGGCGCGGCGCGATCTGCGCAAGCTGGCCA
GTCTTTGTGGCGCGCGTGAGGAGCGGCTGCGCGAGGCATTGGCGCTGATCGCCCGGCTGGAGCCGCGCCCCGGACGGCGC
TTTGCCGACGTGCAACGCCAGATCATCGTGCCCGACGTCATCGTGCGCCCGGTGCGCAGCGGCGCGGGACGGGTGGAGTT
CAGCGTGCAGCTCAACCCCGACGTCATGCCCAGGCTGCGCGTGCACGACATCTATGCCAGTGCATTGCGCAGCCACCGGG
GCAGCGAAGGCCATGCGGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATATTGCGTGTCTCCCAGGCCATCGTGGAGCGCCAGAAGAATTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATCGCCGATGCGCTGGGCCTGCACGAGTCGACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCCCAGGGCACCTACGAGCTGAAATACTTCTTCGGCTCGGGCCTGGGCACCGAGGCTGGCGGCAATGCATCGAGCACG
GCCGTGCGTGCCCTCATCAAGCAGTTCGTCTCGGCGGAGGATCCCAGGAAACCGCTGTCGGACAACCAACTGGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACCGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCCCCCACCACGC
TGCGCAAGGCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.649

100

0.507

Multiple sequence alignment