Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   APEC2908_RS04740 Genome accession   NZ_LR740776
Coordinates   1001401..1002030 (+) Length   209 a.a.
NCBI ID   WP_161476155.1    Uniprot ID   -
Organism   Escherichia coli strain BEN2908 isolate     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 996401..1007030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APEC2908_RS04720 (APEC2908_0932) ycbZ 996801..998561 (-) 1761 WP_000156501.1 Lon protease family protein -
  APEC2908_RS04725 (APEC2908_0933) matP 998747..999199 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  APEC2908_RS04730 (APEC2908_0934) ompA 999277..1000317 (-) 1041 WP_001350588.1 porin OmpA -
  APEC2908_RS04735 (APEC2908_0936) sulA 1000673..1001182 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  APEC2908_RS04740 (APEC2908_0937) sxy/tfoX 1001401..1002030 (+) 630 WP_161476155.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  APEC2908_RS04745 (APEC2908_0938) yccS 1001993..1004155 (-) 2163 WP_000875041.1 YccS family putative transporter -
  APEC2908_RS04750 (APEC2908_0939) yccF 1004165..1004611 (-) 447 WP_001261236.1 YccF domain-containing protein -
  APEC2908_RS04755 (APEC2908_0940) helD 1004734..1006788 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24156.11 Da        Isoelectric Point: 9.2180

>NTDB_id=1129763 APEC2908_RS04740 WP_161476155.1 1001401..1002030(+) (sxy/tfoX) [Escherichia coli strain BEN2908 isolate]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDVALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1129763 APEC2908_RS04740 WP_161476155.1 1001401..1002030(+) (sxy/tfoX) [Escherichia coli strain BEN2908 isolate]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGATACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGTAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986

Multiple sequence alignment