Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BAMY6639_RS08865 Genome accession   NZ_CP006058
Coordinates   1825163..1825282 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820163..1830282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS08845 (BAMY6639_09330) - 1820513..1821025 (+) 513 Protein_1787 bacteriocin biosynthesis protein AlbG -
  BAMY6639_RS08850 (BAMY6639_09335) - 1821032..1822408 (-) 1377 WP_061860962.1 YncE family protein -
  BAMY6639_RS08855 (BAMY6639_09340) - 1822448..1823803 (-) 1356 WP_061860963.1 YncE family protein -
  BAMY6639_RS08860 (BAMY6639_09345) rapF 1824034..1825179 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  BAMY6639_RS08865 (BAMY6639_09350) phrF 1825163..1825282 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAMY6639_RS08870 (BAMY6639_09355) - 1825480..1825683 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BAMY6639_RS08875 (BAMY6639_09360) - 1825697..1825900 (+) 204 WP_007407641.1 hypothetical protein -
  BAMY6639_RS08880 (BAMY6639_09365) - 1825935..1826120 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  BAMY6639_RS08885 (BAMY6639_09370) - 1826306..1826587 (+) 282 WP_061860964.1 hypothetical protein -
  BAMY6639_RS08890 (BAMY6639_09375) - 1826631..1827143 (+) 513 WP_060673881.1 stage II sporulation protein M -
  BAMY6639_RS08900 (BAMY6639_09385) - 1827734..1827952 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  BAMY6639_RS08905 (BAMY6639_09390) speB 1828120..1828992 (-) 873 WP_007407646.1 agmatinase -
  BAMY6639_RS08910 (BAMY6639_09395) speE 1829051..1829881 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=112975 BAMY6639_RS08865 WP_015240778.1 1825163..1825282(+) (phrF) [Bacillus amyloliquefaciens UMAF6639]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=112975 BAMY6639_RS08865 WP_015240778.1 1825163..1825282(+) (phrF) [Bacillus amyloliquefaciens UMAF6639]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment