Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GPW68_RS03655 Genome accession   NZ_LR738723
Coordinates   709375..710178 (+) Length   267 a.a.
NCBI ID   WP_023369694.1    Uniprot ID   A0A822VJ97
Organism   Streptococcus suis isolate GD-0088     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 704375..715178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS03630 - 704804..705502 (-) 699 WP_002935835.1 amino acid ABC transporter permease -
  GPW68_RS03635 - 705517..706356 (-) 840 WP_074389305.1 transporter substrate-binding domain-containing protein -
  GPW68_RS03640 - 706367..707128 (-) 762 WP_074389306.1 amino acid ABC transporter ATP-binding protein -
  GPW68_RS03645 micA 707322..708026 (+) 705 WP_002935840.1 response regulator YycF Regulator
  GPW68_RS03650 micB 708019..709368 (+) 1350 WP_024405653.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GPW68_RS03655 vicX 709375..710178 (+) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  GPW68_RS03660 - 710518..710898 (+) 381 Protein_659 ATP-binding cassette domain-containing protein -
  GPW68_RS03665 pbp2b 710990..713065 (+) 2076 WP_024405652.1 penicillin-binding protein PBP2B -
  GPW68_RS03670 recR 713074..713670 (+) 597 WP_002935848.1 recombination mediator RecR -
  GPW68_RS03675 - 713775..714821 (+) 1047 WP_023369700.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29672.84 Da        Isoelectric Point: 6.1694

>NTDB_id=1129547 GPW68_RS03655 WP_023369694.1 709375..710178(+) (vicX) [Streptococcus suis isolate GD-0088]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGKRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1129547 GPW68_RS03655 WP_023369694.1 709375..710178(+) (vicX) [Streptococcus suis isolate GD-0088]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGATCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAAACGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VJ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764

Multiple sequence alignment