Detailed information NTG1129440

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GPW51_RS04055
• Genome accession: NZ_LR738721
• Coordinates: 814081..815307 (+)
• Length: 408 a.a.
• NCBI ID: WP_002934974.1
• Uniprot ID: G7SE29
• Organism: Streptococcus suis isolate S10
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 809081..820307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW51_RS04020	-	810085..810420 (+)	336	WP_002934966.1	hypothetical protein	-
GPW51_RS04025	-	810516..811475 (+)	960	WP_012775086.1	ROK family glucokinase	-
GPW51_RS04030	-	811601..811879 (+)	279	WP_012775087.1	hypothetical protein	-
GPW51_RS04035	-	811891..812193 (+)	303	WP_012775088.1	hypothetical protein	-
GPW51_RS04040	-	812246..813085 (+)	840	WP_011922359.1	thymidylate synthase	-
GPW51_RS04045	-	813371..813883 (+)	513	WP_011922360.1	dihydrofolate reductase	-
GPW51_RS04055	clpX	814081..815307 (+)	1227	WP_002934974.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GPW51_RS04060	yihA	815363..815950 (+)	588	WP_012775089.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
GPW51_RS04065	ndk	815973..816386 (+)	414	WP_012028095.1	nucleoside-diphosphate kinase	-
GPW51_RS04070	-	816490..817161 (+)	672	WP_011922364.1	HIRAN domain-containing protein	-
GPW51_RS04075	lepA	817443..819275 (+)	1833	WP_002943192.1	translation elongation factor 4	-
GPW51_RS04080	-	819325..819507 (-)	183	WP_002934978.1	4-oxalocrotonate tautomerase	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 45318.84 Da
• Isoelectric Point: 4.6382

>NTDB_id=1129440 GPW51_RS04055 WP_002934974.1 814081..815307(+) (clpX) [Streptococcus suis isolate S10]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide

• Length: 1227 bp

>NTDB_id=1129440 GPW51_RS04055 WP_002934974.1 814081..815307(+) (clpX) [Streptococcus suis isolate S10]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCAGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTAGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGTAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAAACTGGTGCTCGTGGACTTCGCTCTATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-47)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-304)

3D structure

• AlphaFold DB: G7SE29

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	83.13	100	0.833
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.209	98.529	0.574