Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PDMSB3_RS01900 | Genome accession | NZ_LR699553 |
| Coordinates | 400951..402108 (-) | Length | 385 a.a. |
| NCBI ID | WP_165184386.1 | Uniprot ID | A0A5Q4ZCQ0 |
| Organism | Paraburkholderia dioscoreae strain Msb3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 395951..407108
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDMSB3_RS01875 (PDMSB3_0399) | - | 397078..397641 (+) | 564 | WP_007179431.1 | acyloxyacyl hydrolase | - |
| PDMSB3_RS01880 (PDMSB3_0400) | - | 397685..398068 (+) | 384 | WP_007179430.1 | nuclear transport factor 2 family protein | - |
| PDMSB3_RS01885 (PDMSB3_0401) | ybiB | 398296..399267 (-) | 972 | WP_165184383.1 | DNA-binding protein YbiB | - |
| PDMSB3_RS01890 (PDMSB3_0402) | - | 399496..400194 (+) | 699 | WP_007179428.1 | fumarylacetoacetate hydrolase family protein | - |
| PDMSB3_RS01895 (PDMSB3_0403) | maiA | 400221..400865 (+) | 645 | WP_007179427.1 | maleylacetoacetate isomerase | - |
| PDMSB3_RS01900 (PDMSB3_0404) | pilA | 400951..402108 (-) | 1158 | WP_165184386.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| PDMSB3_RS01905 (PDMSB3_0405) | rsmD | 402350..402964 (+) | 615 | WP_007179425.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| PDMSB3_RS01910 (PDMSB3_0406) | coaD | 403076..403591 (+) | 516 | WP_007179424.1 | pantetheine-phosphate adenylyltransferase | - |
| PDMSB3_RS01915 (PDMSB3_0407) | - | 403655..403912 (+) | 258 | WP_007179423.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| PDMSB3_RS01920 (PDMSB3_0408) | hisC | 403997..405076 (-) | 1080 | WP_007179422.1 | histidinol-phosphate transaminase | - |
| PDMSB3_RS01925 (PDMSB3_0409) | pth | 405147..405749 (-) | 603 | WP_007179421.1 | aminoacyl-tRNA hydrolase | - |
| PDMSB3_RS01930 (PDMSB3_0410) | - | 405897..406514 (-) | 618 | WP_007179420.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 385 a.a. Molecular weight: 40866.82 Da Isoelectric Point: 5.0802
>NTDB_id=1129335 PDMSB3_RS01900 WP_165184386.1 400951..402108(-) (pilA) [Paraburkholderia dioscoreae strain Msb3]
MFSFFKRFKGSKESDNAPEESQTAPEGSTPGAAVQAPAPVAPATPRPAAAPARVETPAPSAIEPEPEESAPETVEIVPPP
RPDVGAKRSWLTRLKTGLSKTSSSLTGIFVGAKIDEDLYEELETALLMSDAGVDATEYLLEALREKVRAERLTDPQQVKA
ALRTLLVDLLRPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNV
TVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG
MFSFFKRFKGSKESDNAPEESQTAPEGSTPGAAVQAPAPVAPATPRPAAAPARVETPAPSAIEPEPEESAPETVEIVPPP
RPDVGAKRSWLTRLKTGLSKTSSSLTGIFVGAKIDEDLYEELETALLMSDAGVDATEYLLEALREKVRAERLTDPQQVKA
ALRTLLVDLLRPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNV
TVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG
Nucleotide
Download Length: 1158 bp
>NTDB_id=1129335 PDMSB3_RS01900 WP_165184386.1 400951..402108(-) (pilA) [Paraburkholderia dioscoreae strain Msb3]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCCGAAGAGTCGCAAACCGCGCCAGAAGG
CTCGACGCCCGGAGCCGCCGTGCAGGCGCCTGCGCCTGTCGCGCCGGCCACCCCGCGCCCCGCGGCTGCTCCGGCTCGCG
TCGAAACACCCGCTCCGTCCGCAATCGAGCCCGAGCCGGAAGAATCCGCGCCCGAGACCGTCGAAATCGTTCCGCCGCCG
CGGCCGGACGTGGGCGCAAAGCGCTCGTGGCTGACGCGCCTGAAAACCGGCTTGTCGAAGACGAGTTCGAGCCTGACCGG
CATCTTTGTCGGTGCGAAGATCGACGAAGACCTGTACGAAGAACTCGAAACTGCACTGCTCATGTCGGACGCGGGGGTCG
ACGCCACCGAATACCTGCTCGAAGCGCTGCGCGAAAAAGTGCGCGCCGAGCGCCTCACCGATCCGCAACAGGTCAAAGCG
GCGTTGCGCACACTGCTCGTCGACCTGCTCAGGCCACTGGAAAAATCGCTGATGCTGGGCCGCGCCCAGCCGCTCGTGAT
GATGATCGCCGGCGTCAACGGCGCGGGCAAAACCACCAGTATCGGCAAGCTCGCCAAGCATCTGCAAAGCTTCGATCAGT
CGGTACTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTGGCCATCTGGGGCCAGCGCAACAACGTG
ACCGTGGTGTCGCAGGAAAGCGGCGACCCGGCGGCGGTGATCTTCGACGCGGTCGGCGCCGCACGGGCCCGCAAAATCGA
CGTGATGATGGCGGATACGGCCGGCCGCCTGCCGACCCAACTGCATCTCATGGAAGAACTGCGCAAGGTGAAGCGCGTGA
TCGGCAAGGCGCAAGAAGGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTCGCGCAA
GTAAAGGCTTTCGACGACGCGCTCGGCCTCACCGGCCTGATCGTGACCAAGCTCGACGGCACGGCGAAAGGCGGCATTCT
GGCCGCGATCGCACGGCAGCGTCCGATCCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTCGAGGACTTGCAGCCGTTCA
GCGCGGAAGAGTTTTCCGACGCATTACTGGGCGGTTGA
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCCGAAGAGTCGCAAACCGCGCCAGAAGG
CTCGACGCCCGGAGCCGCCGTGCAGGCGCCTGCGCCTGTCGCGCCGGCCACCCCGCGCCCCGCGGCTGCTCCGGCTCGCG
TCGAAACACCCGCTCCGTCCGCAATCGAGCCCGAGCCGGAAGAATCCGCGCCCGAGACCGTCGAAATCGTTCCGCCGCCG
CGGCCGGACGTGGGCGCAAAGCGCTCGTGGCTGACGCGCCTGAAAACCGGCTTGTCGAAGACGAGTTCGAGCCTGACCGG
CATCTTTGTCGGTGCGAAGATCGACGAAGACCTGTACGAAGAACTCGAAACTGCACTGCTCATGTCGGACGCGGGGGTCG
ACGCCACCGAATACCTGCTCGAAGCGCTGCGCGAAAAAGTGCGCGCCGAGCGCCTCACCGATCCGCAACAGGTCAAAGCG
GCGTTGCGCACACTGCTCGTCGACCTGCTCAGGCCACTGGAAAAATCGCTGATGCTGGGCCGCGCCCAGCCGCTCGTGAT
GATGATCGCCGGCGTCAACGGCGCGGGCAAAACCACCAGTATCGGCAAGCTCGCCAAGCATCTGCAAAGCTTCGATCAGT
CGGTACTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTGGCCATCTGGGGCCAGCGCAACAACGTG
ACCGTGGTGTCGCAGGAAAGCGGCGACCCGGCGGCGGTGATCTTCGACGCGGTCGGCGCCGCACGGGCCCGCAAAATCGA
CGTGATGATGGCGGATACGGCCGGCCGCCTGCCGACCCAACTGCATCTCATGGAAGAACTGCGCAAGGTGAAGCGCGTGA
TCGGCAAGGCGCAAGAAGGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTCGCGCAA
GTAAAGGCTTTCGACGACGCGCTCGGCCTCACCGGCCTGATCGTGACCAAGCTCGACGGCACGGCGAAAGGCGGCATTCT
GGCCGCGATCGCACGGCAGCGTCCGATCCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTCGAGGACTTGCAGCCGTTCA
GCGCGGAAGAGTTTTCCGACGCATTACTGGGCGGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
52.619 |
100 |
0.574 |