Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QOY30_RS15660 Genome accession   NZ_LR699166
Coordinates   3292323..3293684 (-) Length   453 a.a.
NCBI ID   WP_283745554.1    Uniprot ID   -
Organism   Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287323..3298684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY30_RS15645 (SIDCL21_3288) - 3287491..3288639 (-) 1149 WP_283745551.1 ribonucleotide-diphosphate reductase subunit beta -
  QOY30_RS15650 (SIDCL21_3289) - 3288694..3291573 (-) 2880 WP_283745552.1 ribonucleoside-diphosphate reductase subunit alpha -
  QOY30_RS15655 (SIDCL21_3290) ampD 3291790..3292326 (-) 537 WP_283745553.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QOY30_RS15660 (SIDCL21_3291) pilR 3292323..3293684 (-) 1362 WP_283745554.1 sigma-54 dependent transcriptional regulator Regulator
  QOY30_RS15665 (SIDCL21_3292) - 3293674..3295227 (-) 1554 WP_283745555.1 ATP-binding protein -
  QOY30_RS15670 (SIDCL21_3293) - 3295305..3295523 (-) 219 WP_283745556.1 PP0621 family protein -
  QOY30_RS15675 (SIDCL21_3294) - 3295780..3296010 (-) 231 WP_283745557.1 hypothetical protein -
  QOY30_RS15680 (SIDCL21_3295) - 3296284..3297738 (+) 1455 WP_283745558.1 hypothetical protein -
  QOY30_RS15685 (SIDCL21_3296) - 3297735..3297935 (+) 201 WP_283745559.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50453.00 Da        Isoelectric Point: 6.1424

>NTDB_id=1129327 QOY30_RS15660 WP_283745554.1 3292323..3293684(-) (pilR) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
MSLKSKKIPRVLIVDDEADILELLELTLVRMGLEVVRASGVKQAKERLDSESFDLCLTDMRMPDGEGLEVVRHIAERSLD
VPVAVITAHGNLENAVAVLKAGAFDYLSKPVALDQLRTLVTSALRLPGQSEFKKGEESVLLGSSPVLAQVRELINRVARS
QAPVHISGESGSGKELAARLIVEKSSRHGQPFIAVNCGAIPENLMESEFFGYRKGAFTGAEKDREGFFQAANQGTLLLDE
VADLPMAMQVKLLRAIQERKVRRVGSTQEESVDVRILSATHHDLVACVQQGRFRQDLYYRLNVISLHMPSLREMREDVPQ
IANQVLERLRGSSTAKFSAEALRELERYDFPGNVRELENIIERALALCFDNVIAPVDLQLMPLQSAQGEVMPGGVGKYPL
TDYLDRIERDAILEALHQTRFNRTAAAKILGVTFRALRYRMERLSITDKDNID

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1129327 QOY30_RS15660 WP_283745554.1 3292323..3293684(-) (pilR) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
ATGAGTCTTAAGTCAAAAAAGATCCCGCGTGTGCTGATCGTGGACGATGAGGCGGACATCCTGGAATTATTGGAGTTGAC
GCTGGTGCGCATGGGGTTGGAGGTAGTGCGTGCAAGCGGCGTGAAACAAGCCAAGGAACGCCTGGACTCGGAAAGCTTTG
ATCTGTGTCTGACCGATATGCGCATGCCGGACGGTGAAGGACTTGAGGTTGTGCGGCACATTGCCGAGCGCAGTCTGGAT
GTGCCGGTGGCGGTGATTACTGCCCATGGCAATCTGGAGAACGCAGTGGCAGTCCTCAAGGCCGGGGCGTTCGATTATTT
GTCCAAACCGGTAGCGCTGGATCAATTGCGCACGCTGGTCACCTCAGCGCTCAGATTGCCCGGGCAAAGTGAGTTCAAAA
AAGGCGAGGAAAGCGTTTTGCTGGGGAGTTCGCCTGTCTTGGCGCAAGTTCGTGAATTGATCAACCGTGTGGCGCGCAGT
CAGGCGCCGGTGCATATCAGCGGTGAATCCGGCAGTGGTAAGGAGCTGGCAGCTCGACTGATCGTAGAAAAAAGTTCAAG
GCATGGTCAGCCTTTCATTGCAGTAAATTGCGGCGCAATTCCCGAGAATCTGATGGAAAGCGAATTCTTTGGCTACCGCA
AGGGTGCATTCACGGGGGCGGAAAAGGATAGGGAAGGGTTCTTCCAGGCGGCAAATCAGGGAACCTTGCTATTGGACGAG
GTGGCTGACTTGCCAATGGCGATGCAGGTCAAGCTGCTGCGGGCTATTCAGGAAAGGAAAGTGCGCCGTGTCGGTTCTAC
GCAAGAAGAGTCTGTGGATGTGCGCATCCTCAGCGCAACTCATCATGACCTGGTTGCTTGCGTGCAACAAGGCAGGTTTC
GACAAGATCTCTATTACCGCCTCAACGTCATTTCGTTGCATATGCCCTCATTGCGAGAGATGCGCGAGGACGTGCCGCAA
ATTGCCAACCAGGTTCTGGAACGCTTGCGCGGAAGCTCGACCGCCAAATTCTCAGCAGAGGCGCTGCGCGAACTGGAAAG
GTATGACTTTCCCGGCAATGTGCGGGAACTGGAAAACATCATTGAGCGTGCACTGGCGTTGTGTTTTGATAACGTCATTG
CGCCCGTTGATTTGCAGTTGATGCCGTTGCAGTCGGCACAAGGCGAGGTAATGCCAGGAGGGGTTGGCAAGTATCCCCTG
ACCGATTATCTGGATCGAATCGAGCGTGATGCCATTCTGGAGGCGCTTCATCAAACCCGTTTCAACCGCACTGCCGCAGC
CAAGATACTGGGCGTAACGTTTCGTGCGCTGCGTTATCGCATGGAGCGCTTATCCATTACAGATAAGGACAACATCGATT
GA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory protein, Fis family (HTH_8)

(404-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.145

97.572

0.567
  pilR Acinetobacter baumannii strain A118

46.304

100

0.47

Multiple sequence alignment