Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FX095_RS10855 Genome accession   NZ_LR698992
Coordinates   2216560..2217351 (-) Length   263 a.a.
NCBI ID   WP_027823241.1    Uniprot ID   A0A248LK49
Organism   Laribacter hongkongensis isolate MGYG-HGUT-02398     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2211560..2222351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX095_RS10825 - 2212162..2213643 (+) 1482 WP_088861125.1 aldehyde dehydrogenase -
  FX095_RS10830 - 2213709..2214044 (+) 336 WP_088861126.1 rhodanese-like domain-containing protein -
  FX095_RS10835 - 2214077..2214382 (+) 306 WP_088861127.1 helix-turn-helix transcriptional regulator -
  FX095_RS10840 - 2214447..2214791 (+) 345 WP_012697686.1 carboxymuconolactone decarboxylase family protein -
  FX095_RS10845 - 2214898..2215740 (+) 843 WP_088861128.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FX095_RS10850 - 2215753..2216493 (-) 741 WP_088861129.1 YdcF family protein -
  FX095_RS10855 comL 2216560..2217351 (-) 792 WP_027823241.1 outer membrane protein assembly factor BamD Machinery gene
  FX095_RS10860 rluD 2217350..2218399 (+) 1050 WP_012697690.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FX095_RS10865 pgeF 2218404..2219135 (+) 732 WP_088861130.1 peptidoglycan editing factor PgeF -
  FX095_RS10870 - 2219137..2219682 (+) 546 WP_088861131.1 DUF2946 family protein -
  FX095_RS10875 - 2219929..2220138 (+) 210 WP_012697693.1 cold-shock protein -
  FX095_RS10880 - 2220471..2221214 (-) 744 WP_012697694.1 amino acid ABC transporter permease -
  FX095_RS10885 - 2221287..2222102 (-) 816 WP_088861132.1 basic amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30398.49 Da        Isoelectric Point: 7.9674

>NTDB_id=1129057 FX095_RS10855 WP_027823241.1 2216560..2217351(-) (comL) [Laribacter hongkongensis isolate MGYG-HGUT-02398]
MKKIAVMMLMAAWLAGCSTTSEPADETRGWTVEKLYSEARDELNSGNYTRAIKLYETLEARYPYGRYAQQAQMDLAYAHF
KDQEPALSLAAADRFIKLHPAHPNVDYVYYLKGLVNYNEDGGILSKYTGQDRAERDPKAAREAFTSFRDLVVRFPDSKYA
PDARVKMQNLVDGLAEHELFVARYYMRRSAYLAAANRAQGMIKEFPDSPFVEESFAIMVTAYDKLGKTTLRDDTRRVLET
NFPNSVYLKKPWQPRDVPWYQFW

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1129057 FX095_RS10855 WP_027823241.1 2216560..2217351(-) (comL) [Laribacter hongkongensis isolate MGYG-HGUT-02398]
ATGAAAAAAATCGCGGTAATGATGCTGATGGCGGCCTGGCTTGCCGGGTGTTCGACCACCTCCGAGCCAGCGGACGAGAC
GCGCGGCTGGACAGTCGAAAAACTCTATTCCGAGGCGCGCGACGAGCTGAATAGTGGAAATTATACGCGGGCGATCAAGC
TCTACGAAACGCTCGAAGCGCGTTATCCGTATGGCCGTTATGCCCAGCAGGCGCAGATGGACCTCGCCTACGCGCACTTC
AAGGACCAGGAACCGGCCTTGTCGCTGGCCGCTGCCGACCGCTTCATCAAGCTGCACCCGGCGCACCCGAACGTTGACTA
CGTCTACTATCTCAAGGGACTGGTCAACTACAACGAAGACGGCGGCATCCTGTCCAAATACACTGGCCAGGACCGGGCCG
AGCGTGATCCCAAGGCCGCGCGCGAGGCCTTTACCTCTTTCCGTGATCTGGTCGTGCGCTTCCCGGACAGCAAGTATGCC
CCGGATGCCCGGGTGAAAATGCAGAACCTCGTCGATGGCCTGGCCGAACACGAGCTCTTCGTCGCGCGCTATTACATGCG
CCGCAGCGCCTATCTGGCAGCCGCAAACCGTGCCCAGGGCATGATCAAGGAATTCCCGGATTCGCCGTTTGTCGAAGAAT
CCTTCGCCATCATGGTGACGGCCTACGACAAGCTCGGCAAAACCACCCTGCGCGACGATACCCGCCGGGTGCTGGAAACC
AACTTCCCCAACAGCGTCTACCTGAAAAAGCCGTGGCAGCCGCGTGACGTGCCGTGGTACCAGTTCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248LK49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

55.639

100

0.563
  comL Neisseria gonorrhoeae MS11

54.511

100

0.551

Multiple sequence alignment