Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | FX000_RS13205 | Genome accession | NZ_LR698983 |
| Coordinates | 2533725..2534060 (+) | Length | 111 a.a. |
| NCBI ID | WP_025804940.1 | Uniprot ID | A0AB37GFT9 |
| Organism | Bacillus licheniformis isolate MGYG-HGUT-02357 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2528725..2539060
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FX000_RS13185 | gcvT | 2529157..2530251 (-) | 1095 | WP_003183436.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FX000_RS13190 | - | 2530844..2532523 (+) | 1680 | WP_003183439.1 | DEAD/DEAH box helicase | - |
| FX000_RS13195 | - | 2532530..2533324 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| FX000_RS13200 | sinI | 2533515..2533691 (+) | 177 | WP_003183444.1 | anti-repressor SinI | Regulator |
| FX000_RS13205 | sinR | 2533725..2534060 (+) | 336 | WP_025804940.1 | transcriptional regulator SinR | Regulator |
| FX000_RS13210 | tasA | 2534165..2534959 (-) | 795 | WP_003183447.1 | biofilm matrix protein TasA | - |
| FX000_RS13215 | sipW | 2535033..2535617 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| FX000_RS13220 | tapA | 2535614..2536342 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| FX000_RS13225 | - | 2536619..2536939 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| FX000_RS13230 | - | 2536963..2537145 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| FX000_RS13235 | comGG | 2537234..2537599 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| FX000_RS13240 | comGF | 2537612..2538100 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| FX000_RS13245 | comGE | 2538009..2538356 (-) | 348 | WP_009327907.1 | competence type IV pilus minor pilin ComGE | - |
| FX000_RS13250 | comGD | 2538340..2538777 (-) | 438 | WP_009327905.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12991.60 Da Isoelectric Point: 5.9495
>NTDB_id=1128880 FX000_RS13205 WP_025804940.1 2533725..2534060(+) (sinR) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=1128880 FX000_RS13205 WP_025804940.1 2533725..2534060(+) (sinR) [Bacillus licheniformis isolate MGYG-HGUT-02357]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |