Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   FQT45_RS08025 Genome accession   NZ_LR595858
Coordinates   1639396..1640697 (-) Length   433 a.a.
NCBI ID   WP_077323439.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1634396..1645697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS10700 (NCTC10228_01648) - 1636497..1637444 (+) 948 WP_223837105.1 transposase -
  FQT45_RS10705 (NCTC10228_01649) - 1637441..1638022 (+) 582 WP_232036635.1 transposase -
  FQT45_RS08015 (NCTC10228_01650) hpf 1638103..1638651 (-) 549 WP_077323437.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FQT45_RS08020 (NCTC10228_01651) - 1638726..1639406 (-) 681 WP_077323438.1 ComF family protein -
  FQT45_RS08025 (NCTC10228_01652) comFA/cflA 1639396..1640697 (-) 1302 WP_077323439.1 DEAD/DEAH box helicase Machinery gene
  FQT45_RS08030 (NCTC10228_01653) - 1640753..1641382 (+) 630 WP_077323440.1 YigZ family protein -
  FQT45_RS08035 (NCTC10228_01654) cysK 1641495..1642421 (+) 927 WP_077323441.1 cysteine synthase A -
  FQT45_RS08040 (NCTC10228_01655) - 1642454..1642807 (-) 354 WP_007892969.1 S1 RNA-binding domain-containing protein -
  FQT45_RS08045 (NCTC10228_01656) - 1642807..1644207 (-) 1401 WP_077323442.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FQT45_RS08050 (NCTC10228_01657) - 1644241..1644882 (-) 642 WP_007892962.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49275.13 Da        Isoelectric Point: 9.7308

>NTDB_id=1128494 FQT45_RS08025 WP_077323439.1 1639396..1640697(-) (comFA/cflA) [Streptococcus pseudoporcinus strain NCTC10228]
MEDLENLYGRIFTAKQISDEAQKVARTKDSFEGDGKAYYCGRCLSKAGKDHLLPNGHYYCRQCLVFGRVQSHDKLYYFPA
PPFLKGNYLKWKGSLTPYQESISKQLVENYYLGKWSLVYAVTGAGKTEMIYSVIKEVVNSGKWVALVSPRVDVCIEVYKR
LSRDFSCQTILMHAGSESYHRAPLVIATTHQLLKFYKAFHLIIIDEVDSFPFVDNPLLNRAVMSALKEEGQLIYLTATST
KFLESEVTKGKLIKLTLPRRFHNNPLIVPKFQLILNFQNYLDKGKLPTKLYSAIQKQTSLPYPLLIFYPVIEKGQMFYDS
LVKTFPNHQIGYVSSQTAKRKELIEDFRQGNLSILVTTTILERGVTFPGVDVFVVLAHHHLFTSSSLIQISGRVGRSVDR
PNGKVIFFHEGVSSAMYKARKEIIALNKEAYGS

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=1128494 FQT45_RS08025 WP_077323439.1 1639396..1640697(-) (comFA/cflA) [Streptococcus pseudoporcinus strain NCTC10228]
ATGGAAGATTTAGAGAATTTATATGGTCGCATATTCACAGCTAAGCAAATTAGTGACGAAGCACAAAAGGTCGCAAGAAC
GAAAGATAGTTTTGAGGGTGATGGTAAGGCTTATTATTGCGGACGTTGTCTCAGTAAAGCTGGTAAAGATCACTTACTGC
CTAATGGGCATTATTATTGTAGACAATGTTTAGTTTTTGGACGAGTGCAAAGTCATGATAAACTCTATTATTTTCCTGCT
CCGCCATTTTTAAAAGGAAATTATCTCAAGTGGAAAGGAAGCTTAACTCCTTATCAAGAGAGTATTTCTAAACAATTAGT
TGAAAATTATTATTTAGGAAAATGGAGTCTGGTTTATGCAGTTACAGGGGCAGGTAAAACGGAGATGATTTATAGCGTTA
TCAAAGAAGTAGTCAATAGTGGGAAATGGGTTGCTTTAGTCAGTCCGAGAGTTGATGTCTGTATTGAAGTCTATAAACGC
TTAAGCCGTGATTTCTCATGTCAGACTATTTTGATGCATGCGGGGTCAGAAAGTTACCACAGAGCTCCGCTTGTTATTGC
CACAACCCACCAGTTATTGAAGTTTTATAAGGCATTTCATTTAATTATTATTGATGAGGTTGATTCTTTTCCCTTTGTTG
ATAATCCCCTCCTAAATCGTGCTGTTATGTCAGCATTGAAAGAGGAAGGCCAGTTAATCTATTTGACAGCCACATCCACG
AAGTTTTTAGAAAGTGAGGTGACCAAAGGGAAACTGATCAAATTAACACTTCCAAGACGATTTCATAACAATCCATTAAT
AGTGCCTAAATTTCAATTGATTTTAAACTTTCAAAACTATTTAGATAAAGGTAAACTCCCTACCAAACTATACTCTGCCA
TCCAAAAGCAGACTTCTTTGCCATATCCTCTTTTGATTTTTTATCCTGTTATAGAGAAAGGTCAAATGTTCTATGATAGT
TTAGTAAAAACATTTCCTAATCACCAAATAGGCTATGTCAGTAGTCAAACGGCTAAACGTAAAGAACTGATTGAGGACTT
TCGTCAAGGGAATCTGTCGATTCTTGTTACGACTACTATACTAGAAAGAGGTGTTACTTTTCCTGGGGTAGATGTCTTTG
TTGTATTAGCGCATCATCACCTTTTTACGTCTTCAAGTCTCATTCAAATATCAGGGCGTGTTGGGAGATCCGTTGATAGG
CCAAATGGTAAGGTAATATTCTTCCATGAGGGAGTGAGCTCTGCTATGTATAAAGCTAGAAAAGAAATAATAGCTTTAAA
TAAGGAAGCTTATGGATCATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(290-396)

DEAD/DEAH box helicase (DEAD)

(101-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae D39

54.265

97.46

0.529
  comFA/cflA Streptococcus pneumoniae R6

54.265

97.46

0.529
  comFA/cflA Streptococcus pneumoniae TIGR4

54.265

97.46

0.529
  comFA/cflA Streptococcus pneumoniae Rx1

54.265

97.46

0.529
  comFA/cflA Streptococcus mitis SK321

52.941

98.152

0.52
  comFA/cflA Streptococcus mitis NCTC 12261

52.706

98.152

0.517
  comFA Lactococcus lactis subsp. cremoris KW2

46.923

90.069

0.423
  comFA Latilactobacillus sakei subsp. sakei 23K

37.529

99.076

0.372

Multiple sequence alignment