Detailed information NTG1128251

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: E5CHR_RS25630
• Genome accession: NZ_LR594675
• Coordinates: 5366891..5368060 (+)
• Length: 389 a.a.
• NCBI ID: WP_162582434.1
• Uniprot ID: A0A6P2FNH8
• Organism: Variovorax sp. PBS-H4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5361891..5373060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5CHR_RS25605 (H4CHR_05107)	pxpB	5361965..5362621 (-)	657	WP_162582429.1	5-oxoprolinase subunit PxpB	-
E5CHR_RS25610 (H4CHR_05108)	coaD	5362618..5363133 (-)	516	WP_162582430.1	pantetheine-phosphate adenylyltransferase	-
E5CHR_RS25615 (H4CHR_05109)	-	5363177..5363830 (-)	654	WP_162582431.1	RsmD family RNA methyltransferase	-
E5CHR_RS25620 (H4CHR_05110)	-	5363951..5365375 (-)	1425	WP_162582432.1	pitrilysin family protein	-
E5CHR_RS25625 (H4CHR_05111)	-	5365395..5366861 (-)	1467	WP_162582433.1	pitrilysin family protein	-
E5CHR_RS25630 (H4CHR_05112)	pilA	5366891..5368060 (+)	1170	WP_162582434.1	signal recognition particle-docking protein FtsY	Machinery gene
E5CHR_RS25635 (H4CHR_05113)	-	5368122..5368583 (+)	462	WP_162582435.1	Mpo1-like protein	-
E5CHR_RS25640 (H4CHR_05114)	rpoH	5368746..5369681 (+)	936	WP_162582436.1	RNA polymerase sigma factor RpoH	-
E5CHR_RS25645 (H4CHR_05115)	-	5369787..5370395 (-)	609	WP_174255744.1	SCO family protein	-
E5CHR_RS25650 (H4CHR_05116)	cyoE	5370404..5371309 (-)	906	WP_162582438.1	heme o synthase	-
E5CHR_RS25655 (H4CHR_05117)	-	5371306..5372499 (-)	1194	WP_162582439.1	COX15/CtaA family protein	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 40891.89 Da
• Isoelectric Point: 4.9715

>NTDB_id=1128251 E5CHR_RS25630 WP_162582434.1 5366891..5368060(+) (pilA) [Variovorax sp. PBS-H4]
MFSFFKKKPAPDSSAPAPAPAETPAEPPAPARSVFSPSSWFGTKPAEAPPAEALPPATPEAPEPLPPAPIPIPEASTPAP
PAAPVEAPPPERSGWLSKLKTGLRKTGNSITAAFVNAQIDDALYEELEEALLMADTGVKATEYLLDDLRRRVRSAMATDA
SQVKLLLAEAIADLLRPLEKDLVIGEHTPTVVMVAGVNGAGKTTSIGKLTKHLSNEGASVLLAAADTFRAAAREQLLVWA
DRNTVEIVSQEGGDPAAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVARADATAPHEVLLVIDGNTGQ
NALAQVRAFDEALGLTGLVITKLDGTAKGGVLCAIARERPVPVYFIGVGEKLEDLETFKAREFAQALMG

Nucleotide

• Length: 1170 bp

>NTDB_id=1128251 E5CHR_RS25630 WP_162582434.1 5366891..5368060(+) (pilA) [Variovorax sp. PBS-H4]
ATGTTCAGCTTCTTCAAAAAAAAGCCGGCCCCTGACAGCTCCGCGCCGGCGCCGGCACCTGCCGAGACGCCCGCCGAGCC
GCCGGCGCCCGCCAGGTCGGTGTTCTCGCCGTCCAGCTGGTTCGGCACCAAGCCGGCCGAGGCGCCGCCGGCGGAGGCCC
TTCCTCCGGCCACGCCCGAAGCGCCCGAGCCGCTCCCTCCCGCTCCCATCCCTATTCCCGAGGCAAGCACGCCAGCGCCA
CCGGCGGCGCCCGTGGAAGCCCCGCCTCCCGAGCGCAGTGGCTGGCTCAGCAAACTCAAGACGGGTTTGCGCAAGACCGG
CAACAGCATCACCGCCGCCTTCGTCAACGCCCAGATCGACGACGCCCTCTACGAGGAGCTCGAAGAGGCCTTGCTGATGG
CCGACACGGGCGTGAAGGCCACGGAATACCTGCTGGACGACCTGCGCCGGCGCGTGCGCAGCGCCATGGCGACCGACGCC
TCTCAGGTCAAGCTGCTGCTGGCCGAGGCAATCGCCGATCTGCTGCGCCCCCTCGAAAAGGACCTGGTGATCGGCGAGCA
CACCCCTACCGTGGTCATGGTGGCGGGAGTCAACGGCGCGGGCAAGACCACCTCGATCGGCAAACTGACCAAGCACCTGT
CCAACGAGGGCGCCTCGGTGCTGCTGGCGGCGGCCGACACCTTCCGCGCTGCGGCGCGCGAGCAACTGCTGGTCTGGGCC
GACCGAAACACCGTGGAGATCGTGAGCCAGGAAGGCGGCGATCCCGCCGCCGTGAGCTTCGACGCGGTCAACGCCGGCAA
GGCACGTGGCAAGGACGTGGTGCTGGTCGATACGGCCGGCCGTCTGCCGACCCAGCTGCACCTGATGGACGAGCTCAAGA
AGATCAAGCGCGTGGTCGCCCGGGCCGACGCCACGGCGCCGCACGAGGTGCTGCTCGTGATCGACGGCAACACGGGTCAG
AACGCCCTGGCCCAGGTGCGGGCCTTCGACGAAGCGCTGGGCCTGACAGGACTGGTCATCACCAAGCTGGATGGCACGGC
GAAGGGCGGCGTGCTGTGCGCGATCGCCCGCGAGCGGCCGGTTCCGGTGTATTTCATCGGCGTTGGCGAGAAGCTGGAAG
ACCTGGAGACGTTCAAGGCACGGGAGTTCGCCCAGGCCCTGATGGGCTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (189-388)

• SRP54-type protein, helical bundle domain (SRP54_N) (107-170)

3D structure

• AlphaFold DB: A0A6P2FNH8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.356	100	0.506